FBXO11
F-box protein 11 | FBX11, UBR6

This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbxs class. It can function as an arginine methyltransferase that symmetrically dimethylates arginine residues, and it acts as an adaptor protein to mediate the neddylation of p53, which leads to the suppression of p53 function. This gene is known to be down-regulated in melanocytes from patients with vitiligo, a skin disorder that results in depigmentation. Polymorphisms in this gene are associated with chronic otitis media with effusion and recurrent otitis media (COME/ROM), a hearing loss disorder, and the knockout of the homologous mouse gene results in the deaf mouse mutant Jeff (Jf), a single gene model of otitis media. Alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jun 2010]

Member of: DE-2 DE-2.1 Developmental clusters: GC2
Biological processes 25 terms
Expression (TPM)
FBXO11 — as a Regulated Gene

TFs regulating FBXO11 0 TFs

Transcription factors with Perturb-seq knockdown data for FBXO11. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = FBXO11 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.

Data: Effect:
TF Mean coef Binding Outlier TF→Gene link

Elements linked to FBXO11

Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of FBXO11, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.

Accessibility Element Dist. to TSS Link type TFs
chr2:47,687,986–47,688,838 218.2 kb Distal (>10kb) Multiome 108
chr2:47,695,400–47,699,248 207.8 kb Distal (>10kb) Multiome 441
chr2:47,727,846–47,728,468 178.4 kb Distal (>10kb) Multiome 46
chr2:47,755,307–47,756,515 150.5 kb Distal (>10kb) Multiome 263
chr2:47,757,206–47,758,182 148.9 kb Distal (>10kb) Multiome 88
chr2:47,759,506–47,760,474 146.5 kb Distal (>10kb) Multiome 166
chr2:47,767,901–47,768,582 138.4 kb Distal (>10kb) Multiome 421
chr2:47,782,231–47,784,581 122.4 kb Distal (>10kb) Multiome 1079
chr2:47,904,657–47,907,193 162 bp At TSS Multiome 972
chr2:48,047,158–48,047,658 140.9 kb Distal (>10kb) Multiome 156
chr2:48,106,181–48,107,250 200.2 kb Distal (>10kb) Multiome HiCAR 634
chr2:48,111,016–48,112,408 205.1 kb Distal (>10kb) Multiome 971

Genome Browser

Genomic view of the FBXO11 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.

chr2:47,677,986 – 48,122,408
Proximal 1 kb Distal 10 kb Multiome HiCAR ATAC-seq RNA-seq