chrX : 29,225,574 29,226,105
531 bp 114 TFs 0 linked genes
This 531 bp open chromatin element has no linked target genes and is bound by 114 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:29,220,574 – 29,231,105
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
114 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 174 bp overlap
BCL11A 4 datasets
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 191 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 111 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 286 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 404 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 220 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 265 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 531 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 285 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 158 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 361 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
E2F1 1 dataset
Motif DE_12h DE_12h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_12h DE_12h-E2F4_MA0470.3 13 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 150 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 396 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 332 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 113 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 234 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 107 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 531 bp overlap
ChIP DE DE-FOXA2-2 531 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 278 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 154 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 169 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 531 bp overlap
ChIP DE DE-GATA4-2 531 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 447 bp overlap
GATA5 3 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 531 bp overlap
ChIP DE DE-GATA6-2 531 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 531 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 531 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 531 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 531 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 394 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 228 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 140 bp overlap
HDAC6 2 datasets
ChIP H1 ENCFF799IKG 151 bp overlap
ChIP WA01 ENCSR000ATQ.HDAC6.WA01 129 bp overlap
HSF2 1 dataset
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Isl1 3 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 531 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 531 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 531 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 387 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 341 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 359 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 531 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 199 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Lef1 4 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 331 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 320 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 531 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 483 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 432 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 531 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 531 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 463 bp overlap
ChIP hESC GSE20650.NANOG.hESC 399 bp overlap
ChIP hESC GSE18292.NANOG.hESC 337 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NIPBL 6 datasets
ChIP WA09 GSE105028.NIPBL.WA09 489 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 399 bp overlap
ChIP hESC GSE64758.NIPBL.hESC 295 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 233 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 352 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 231 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 281 bp overlap
ChIP H1 ENCFF833NJP 297 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 201 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 435 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 531 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 349 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 238 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 299 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 216 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 310 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 531 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 531 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 434 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 229 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 474 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM14 3 datasets
ChIP hESC GSE22767.PRDM14.hESC 531 bp overlap
ChIP hESC GSE138674.PRDM14.hESC 459 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 526 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm14 4 datasets
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Motif DE_24h DE_24h-Prdm14_MA1998.2 8 bp overlap
Motif DE_48h DE_48h-Prdm14_MA1998.2 8 bp overlap
Motif DE_60h DE_60h-Prdm14_MA1998.2 8 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF967OJF 245 bp overlap
RBPJ 4 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
RNF2 3 datasets
ChIP WA01 GSE104690.RNF2.WA01 274 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 475 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 345 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 124 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 243 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 531 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 531 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 523 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 483 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 503 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 451 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 455 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 517 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 531 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 494 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 471 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 521 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 280 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 474 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 421 bp overlap
SOX2 3 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP hESC GSE18292.SOX2.hESC 101 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 481 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 471 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 284 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 464 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 195 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 505 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 490 bp overlap
TCF7 3 datasets
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 347 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 226 bp overlap
TP53 3 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 369 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 297 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 241 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 246 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF274 2 datasets
ChIP H1 ENCFF434LDY 383 bp overlap
ChIP WA01 ENCSR000EUN.ZNF274.WA01 352 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF547 3 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp809 4 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap