chr20 : 48,858,252 48,858,759
507 bp 100 TFs 3 linked genes
This 507 bp open chromatin element is linked to PREX1, ARFGEF2, and CSE1L and is bound by 100 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
PREX1 30.6 kb Distal Multiome
ARFGEF2 63.1 kb Distal Multiome
CSE1L 187.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:48,853,252 – 48,863,759
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 359 bp overlap
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 103 bp overlap
BCL11A 1 dataset
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 58 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 193 bp overlap
BRCA2 1 dataset
ChIP MCF-7 ENCFF531NNL 138 bp overlap
BRD2 3 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 426 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 317 bp overlap
ChIP foreskin_NHM1-5 GSE94488.BRD2.foreskin_NHM1-5 309 bp overlap
BRD3 3 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 507 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 108 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 243 bp overlap
BRD4 11 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 336 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 255 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 476 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 194 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 224 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 255 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 501 bp overlap
ChIP MV4-11_DMSO GSE71776.BRD4.MV4-11_DMSO 213 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 479 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 507 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 232 bp overlap
CEBPA 1 dataset
ChIP MV4-11 GSE88746.CEBPA.MV4-11 189 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 166 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 115 bp overlap
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap
CREBBP 1 dataset
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 135 bp overlap
CTCF 2 datasets
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 229 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 277 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 96 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 365 bp overlap
ChIP K562 ENCFF688PUB 507 bp overlap
ELF1 7 datasets
ChIP K-562 ENCSR502OEK.ELF1.K-562 167 bp overlap
ChIP K-562 ENCSR975SSR.ELF1.K-562 136 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 79 bp overlap
ChIP K562 ENCFF886KFV 337 bp overlap
ChIP MCF-7 ENCFF305BNP 237 bp overlap
ChIP MCF-7 ENCFF687CWI 174 bp overlap
ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 78 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 228 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 291 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 347 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 288 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 132 bp overlap
ESR1 9 datasets
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 452 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 313 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 459 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 507 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 359 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 485 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 253 bp overlap
ChIP T-47D ENCSR000BQD.ESR1.T-47D 112 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 213 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 209 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR597VGC.ETV6.GM12878 507 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 312 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 141 bp overlap
GABPA 1 dataset
ChIP K562 ENCFF139LXS 408 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 340 bp overlap
ChIP DE DE-GATA4-2 360 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 372 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 483 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 485 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 498 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 503 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 468 bp overlap
ChIP foregut GSE117136.GATA6.foregut 369 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 403 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 110 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 204 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 338 bp overlap
Hand1 1 dataset
Motif DE_24h DE_24h-Hand1_MA2123.1 9 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 293 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 368 bp overlap
ChIP K562 ENCFF348IBL 143 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 192 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 335 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 379 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 443 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 377 bp overlap
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 55 bp overlap
KAT2B 1 dataset
ChIP A-549 ENCSR356WVQ.KAT2B.A-549 353 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 132 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 219 bp overlap
ChIP K562 ENCFF320EQC 327 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 90 bp overlap
MITF 5 datasets
ChIP 501-mel GSE61965.MITF.501-mel 197 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 197 bp overlap
ChIP K562 ENCFF731XJJ 425 bp overlap
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 215 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 212 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 245 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 110 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 119 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 166 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 343 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 178 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 125 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 273 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 76 bp overlap
POLR2A 4 datasets
ChIP MCF-7 ENCFF309IKZ 229 bp overlap
ChIP spleen ENCFF044PYR 307 bp overlap
ChIP transverse colon ENCFF607LKE 294 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 307 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 436 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 149 bp overlap
REST 1 dataset
ChIP K562 ENCFF685YZN 245 bp overlap
RXR 1 dataset
ChIP macrophage ERP008801.RXR.macrophage 128 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF437VFY 420 bp overlap
ChIP MCF-7 ENCFF437VFY 414 bp overlap
SMAD1 1 dataset
ChIP K-562 ENCSR038DJJ.SMAD1.K-562 181 bp overlap
SMAD2 3 datasets
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 225 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 308 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 498 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 507 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 507 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 507 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 507 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 239 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 265 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 371 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 278 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 322 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 107 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 279 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 228 bp overlap
SPI1 7 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 79 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 136 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 133 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 117 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 126 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 129 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 109 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 126 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 228 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 156 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 129 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 102 bp overlap
STAT3 5 datasets
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 85 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 150 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 406 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 273 bp overlap
ChIP monocyte_resting GSE120943.STAT3.monocyte_resting 174 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 219 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 438 bp overlap
Tfcp2l1 1 dataset
Motif DE_24h DE_24h-Tfcp2l1_MA0145.2 14 bp overlap
USF1 4 datasets
ChIP A-549 ENCSR000BJB.USF1.A-549 67 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 112 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 75 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 100 bp overlap
USF2 1 dataset
ChIP K562 ENCFF306QPU 301 bp overlap
YBX1 1 dataset
ChIP MCF-7 ENCFF783FFV 252 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ZBTB1 1 dataset
ChIP MCF-7 ENCFF466DUW 331 bp overlap
ZBTB24 1 dataset
Motif DE_24h DE_24h-ZBTB24_MA2330.1 10 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 157 bp overlap
ZFX 3 datasets
ChIP K-562 ENCSR920ASP.ZFX.K-562 124 bp overlap
ChIP K562 ENCFF169LZT 243 bp overlap
ChIP MCF-7 GSE102616.ZFX.MCF-7 352 bp overlap
ZKSCAN3 1 dataset
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF432NXE 326 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
ChIP HEK293 GSE76494.ZNF263.HEK293 75 bp overlap
ZNF623 1 dataset
ChIP HEK293 ENCFF505YHP 99 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 323 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 105 bp overlap
ZNF75A 1 dataset
ChIP K562 ENCFF410JIO 236 bp overlap
ZNF8 1 dataset
ChIP MCF-7 ENCFF142XPL 351 bp overlap