chr19 : 53,132,240 53,132,585
345 bp 89 TFs 1 linked gene
This 345 bp open chromatin element is linked to ZNF415 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ZNF415 309 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:53,127,240 – 53,137,585
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP K-562 ENCSR641BSL.AGO1.K-562 181 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 181 bp overlap
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 223 bp overlap
ARID2 3 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 141 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 108 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 317 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 292 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 152 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 50 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 345 bp overlap
BRD2 8 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 91 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 274 bp overlap
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 155 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 155 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 137 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 137 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 233 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 339 bp overlap
BRD4 23 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 56 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 148 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 345 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 82 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 281 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 201 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 72 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 215 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 123 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 298 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 94 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 83 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 240 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 242 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 213 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 213 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 85 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 290 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 81 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 287 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 261 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 67 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 270 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 233 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 174 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 158 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 273 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 178 bp overlap
CTCF 12 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 142 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 299 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 301 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 93 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 210 bp overlap
ChIP chondrocyte ENCFF134ORZ 345 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 128 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 345 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 345 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 68 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 52 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 104 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 113 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 100 bp overlap
ChIP BLaER1 ENCFF262VBH 53 bp overlap
E2F1 4 datasets
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 337 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 54 bp overlap
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 223 bp overlap
ChIP WTC11 ENCFF994SXO 148 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 50 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 345 bp overlap
EHMT2 1 dataset
ChIP Rh41 GSE118666.EHMT2.Rh41 206 bp overlap
ERG 7 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 207 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 227 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 148 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 107 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 107 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 171 bp overlap
ESR1 12 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 322 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 153 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 187 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 170 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 320 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 335 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 227 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 230 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 345 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 265 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 332 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 59 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 88 bp overlap
EZH2 1 dataset
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 227 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 170 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 345 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 345 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 345 bp overlap
HDAC2 1 dataset
ChIP VCaP_DHAT_2H GSE28950.HDAC2.VCaP_DHAT_2H 223 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 172 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 124 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 91 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 258 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 133 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 73 bp overlap
KDM4A 6 datasets
ChIP H1 ENCFF078LED 314 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 345 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 59 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 110 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 345 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 118 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 138 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 345 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 345 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 210 bp overlap
MAX 6 datasets
ChIP H1 ENCFF914VQY 184 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 118 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 83 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 105 bp overlap
ChIP WTC11 ENCFF223QFY 345 bp overlap
ChIP WTC11 ENCFF223QFY 124 bp overlap
MED1 2 datasets
ChIP VCaP GSE148358.MED1.VCaP 310 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 135 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
MXI1 2 datasets
ChIP neural cell ENCFF623HQN 290 bp overlap
ChIP neural cell ENCFF623HQN 64 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 132 bp overlap
ChIP NB69 GSE138295.MYC.NB69 228 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 279 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 345 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 245 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 295 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 317 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 345 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 274 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 318 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 345 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 116 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 305 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 320 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 345 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 270 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 167 bp overlap
POLR2A 3 datasets
ChIP GM12891 ENCFF012SUT 68 bp overlap
ChIP transverse colon ENCFF098HBD 85 bp overlap
ChIP transverse colon ENCFF193UMS 110 bp overlap
POLR2G 4 datasets
ChIP K562 ENCFF047BLG 276 bp overlap
ChIP K562 ENCFF047BLG 77 bp overlap
ChIP K562 ENCFF648YPL 254 bp overlap
ChIP K562 ENCFF648YPL 77 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 345 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 345 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 182 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 241 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 223 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 345 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 275 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 252 bp overlap
ChIP H1 ENCFF905HFL 53 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 57 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 209 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 210 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 120 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 290 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 218 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 301 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 345 bp overlap
RUNX1 1 dataset
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 291 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 345 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 345 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 84 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 266 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 72 bp overlap
SMAD4 1 dataset
ChIP WTC11 ENCFF195KVB 320 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 303 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 263 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 271 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 221 bp overlap
STAT3 6 datasets
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 146 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 161 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 81 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 71 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 222 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 244 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 81 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 246 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 300 bp overlap
TP53 2 datasets
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 99 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 236 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 277 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 185 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 345 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 287 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 271 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 279 bp overlap
ZBTB7A 2 datasets
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 329 bp overlap
ChIP VCaP_DHT GSE123089.ZBTB7A.VCaP_DHT 270 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 194 bp overlap
ChIP PrEC GSE102616.ZFX.PrEC 219 bp overlap
ZNF281 1 dataset
ChIP WTC11 ENCFF551GAV 284 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 216 bp overlap