chr18 : 53,851,019 53,851,266
247 bp 163 TFs 0 linked genes
This 247 bp open chromatin element has no linked target genes and is bound by 163 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:53,846,019 – 53,856,266
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
163 transcription factors
Source
Cell type
ALX3 1 dataset
Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_12h DE_12h-ARGFX_MA1463.2 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 131 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 161 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 233 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 207 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 247 bp overlap
BRD4 5 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 247 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 150 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 247 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 247 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 183 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 207 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DRGX 1 dataset
Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EMX1 1 dataset
Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 235 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 202 bp overlap
ChIP hESC GSE17917.EP300.hESC 229 bp overlap
ESX1 1 dataset
Motif DE_12h DE_12h-ESX1_MA0644.3 7 bp overlap
EVX1 1 dataset
Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 214 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 202 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 247 bp overlap
ChIP DE DE-FOXA2-2 247 bp overlap
FOXN3 1 dataset
Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 244 bp overlap
ChIP DE DE-GATA4-2 247 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 229 bp overlap
ChIP DE DE-GATA6-2 247 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 220 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 247 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 247 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 247 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 247 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 247 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
GSX1 1 dataset
Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 224 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 184 bp overlap
HOXA1 1 dataset
Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
ISX 1 dataset
Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 244 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_12h DE_12h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_12h DE_12h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_12h DE_12h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 186 bp overlap
MEOX1 1 dataset
Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MIXL1 1 dataset
Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 218 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 141 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 227 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 228 bp overlap
ChIP H1 ENCFF747ZPQ 210 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 247 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 247 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 230 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 247 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 247 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 247 bp overlap
ChIP hESC GSE18292.NANOG.hESC 247 bp overlap
ChIP hESC GSE20650.NANOG.hESC 242 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 246 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 242 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 247 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 148 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NIPBL 3 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 174 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 196 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 191 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_12h DE_12h-NOTO_MA0710.2 7 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 159 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 215 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 70 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PAX4 1 dataset
Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 7 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 231 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 247 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 222 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 247 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 247 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 156 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 153 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRRX1 1 dataset
Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 215 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 198 bp overlap
RAX2 1 dataset
Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SHOX 1 dataset
Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 247 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 174 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 217 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 247 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 247 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 247 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 247 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 247 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 247 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 175 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 65 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 174 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Shox2 1 dataset
Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 203 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TLX2 1 dataset
Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 247 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
UNCX 1 dataset
Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap
VAX1 1 dataset
Motif DE_12h DE_12h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_12h DE_12h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_12h DE_12h-VSX2_MA0726.2 7 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF16 1 dataset
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 247 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 247 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF8 1 dataset
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
mix-a 1 dataset
Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap