chr18 : 49,959,032 49,959,704
672 bp 100 TFs 3 linked genes
This 672 bp open chromatin element is linked to SNHG22, ACAA2, and MYO5B and is bound by 100 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SNHG22 145.4 kb Distal Multiome
ACAA2 145.9 kb Distal Multiome
MYO5B 235.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:49,954,032 – 49,964,704
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
100 transcription factors
Source
Cell type
ARNT 2 datasets
ChIP GM12878 ENCFF831TWO 505 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 330 bp overlap
ATF7 3 datasets
ChIP GM12878 ENCFF037PYH 479 bp overlap
ChIP GM12878 ENCFF037PYH 156 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 501 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BHLHE40 5 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 336 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 592 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 413 bp overlap
ChIP GM12878 ENCSR000DZJ.BHLHE40.GM12878 189 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 283 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 581 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 381 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 441 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 206 bp overlap
CREM 1 dataset
ChIP GM12878 ENCSR839XZU.CREM.GM12878 123 bp overlap
CTCFL 1 dataset
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 161 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 672 bp overlap
Dmrt1 1 dataset
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 315 bp overlap
E4F1 1 dataset
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 312 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCFF813OXE 265 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 390 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 118 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 586 bp overlap
EP300 3 datasets
ChIP GM12878 ENCFF039QRE 351 bp overlap
ChIP GM12878 ENCFF242HCG 361 bp overlap
ChIP GM12878 ENCSR000DZG.EP300.GM12878 276 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 91 bp overlap
ESR2 1 dataset
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
ETV6 3 datasets
ChIP GM12878 ENCFF105ZMI 398 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 453 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 212 bp overlap
FEZF2 1 dataset
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 482 bp overlap
ChIP DE DE-FOXA2-2 496 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 241 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 466 bp overlap
ChIP DE DE-GATA4-2 537 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 460 bp overlap
ChIP DE DE-GATA6-2 519 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 502 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 389 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 374 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 621 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 672 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 512 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 370 bp overlap
GATAD2B 3 datasets
ChIP GM12878 ENCFF781IAU 537 bp overlap
ChIP GM12878 ENCFF781IAU 446 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 672 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 541 bp overlap
ChIP GM12878 ENCFF824TGK 632 bp overlap
IKZF2 5 datasets
ChIP GM12878 ENCFF238LYK 434 bp overlap
ChIP GM12878 ENCFF918AID 361 bp overlap
ChIP GM12878 ENCFF918AID 529 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 625 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 485 bp overlap
IRF4 3 datasets
ChIP B-cell GSE142493.IRF4.B-cell 198 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 161 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 439 bp overlap
JUN 4 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 408 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 308 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 518 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 454 bp overlap
JUND 2 datasets
ChIP GM12878 ENCFF086GAB 285 bp overlap
ChIP GM12878 ENCSR000DYS.JUND.GM12878 186 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 250 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 241 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 339 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
ChIP SEM GSE38339.MEIS1.SEM 129 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCFF995GXC 577 bp overlap
ChIP GM12878 ENCFF995GXC 377 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 635 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 406 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 664 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 264 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 159 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 672 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 297 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 672 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 301 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 236 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 385 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 484 bp overlap
NR2F6 1 dataset
Motif DE_48h DE_48h-NR2F6_MA1539.1 15 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 274 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 306 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 437 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 616 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 249 bp overlap
RAD51 2 datasets
ChIP GM12878 ENCFF916JXQ 441 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 297 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 251 bp overlap
RELA 1 dataset
ChIP GM19099 ENCSR000EBI.RELA.GM19099 193 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 270 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 672 bp overlap
REST 1 dataset
Motif DE_48h DE_48h-REST_MA0138.3 20 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 163 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 440 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 539 bp overlap
SMAD1 2 datasets
ChIP GM12878 ENCFF130NRZ 391 bp overlap
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 312 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 266 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 672 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 672 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 672 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 672 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 672 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 672 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 672 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 672 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 161 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 207 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 238 bp overlap
SMARCA5 2 datasets
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 292 bp overlap
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 102 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 345 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 320 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 672 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_48h DE_48h-SREBF2_MA0596.1 10 bp overlap
STAT5B 3 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 529 bp overlap
ChIP CD8_H9RET GSE64713.STAT5B.CD8_H9RET 437 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 555 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 289 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCFF866POT 176 bp overlap
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 663 bp overlap
TBX21 3 datasets
ChIP GM12878 ENCFF951HUW 522 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 672 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 280 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCFF433DMU 341 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 160 bp overlap
THRA 1 dataset
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 496 bp overlap
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 322 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZMIZ1 1 dataset
ChIP THP-6_shEts1 GSE138516.ZMIZ1.THP-6_shEts1 274 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 465 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 379 bp overlap
ZNF24 1 dataset
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 231 bp overlap
ZNF341 2 datasets
ChIP HIES_EBV-B_ZNF341_isoform1 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform1 204 bp overlap
ChIP HIES_EBV-B_ZNF341_isoform2 GSE113194.ZNF341.HIES_EBV-B_ZNF341_isoform2 186 bp overlap
ZNF684 1 dataset
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap