chr14 : 79,377,693 – 79,378,630
937 bp 108 TFs 1 linked gene
This 937 bp open chromatin element is linked to NRXN3 and is bound by 108 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NRXN3 1207.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr14:79,372,693 – 79,383,630
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 678 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 748 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 436 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 143 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 331 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 180 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 293 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 288 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 235 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 123 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 591 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 486 bp overlap
Ddit3::Cebpa 1 dataset
Motif ES_0h ES_0h-Ddit3Cebpa_MA0019.2 10 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 280 bp overlap
ERF::HOXB13 1 dataset
Motif ES_0h ES_0h-ERFHOXB13_MA1937.2 13 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE68356.ESR1.MCF-7 246 bp overlap
FOXA1 1 dataset
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 128 bp overlap
FOXO1::FLI1 1 dataset
Motif ES_0h ES_0h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 438 bp overlap
GLIS1 1 dataset
Motif ES_0h ES_0h-GLIS1_MA0735.2 15 bp overlap
Gli1 1 dataset
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
HAND2 1 dataset
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF353UJQ 645 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 364 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 283 bp overlap
HES6 1 dataset
Motif ES_0h ES_0h-HES6_MA1493.1 10 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXA3 2 datasets
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXA5 2 datasets
Motif ES_0h ES_0h-HOXA5_MA0158.2 8 bp overlap
Motif ES_0h ES_0h-HOXA5_MA0158.2 8 bp overlap
HOXB4 3 datasets
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 3 datasets
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD3 2 datasets
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
Motif ES_0h ES_0h-HOXD3_MA0912.2 8 bp overlap
HOXD4 3 datasets
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
Hand1::Tcf3 1 dataset
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 287 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 350 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 99 bp overlap
Lhx1 1 dataset
Motif ES_0h ES_0h-Lhx1_MA1518.3 10 bp overlap
MAFF 1 dataset
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 260 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 253 bp overlap
MYBL2 1 dataset
Motif ES_0h ES_0h-MYBL2_MA0777.1 15 bp overlap
MYF6 1 dataset
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 286 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 881 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 753 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 436 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 937 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 549 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 345 bp overlap
ChIP hESC GSE18292.NANOG.hESC 139 bp overlap
ChIP hESC GSE20650.NANOG.hESC 309 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NEUROG2 1 dataset
Motif ES_0h ES_0h-NEUROG2_MA0669.1 10 bp overlap
NFIC::TLX1 1 dataset
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 219 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 208 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 211 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 211 bp overlap
NR1H4::RXRA 1 dataset
Motif ES_0h ES_0h-NR1H4RXRA_MA1146.2 13 bp overlap
NR2F1 2 datasets
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif ES_0h ES_0h-NR2F6_MA1539.1 15 bp overlap
NR4A1 1 dataset
Motif ES_0h ES_0h-NR4A1_MA1112.3 8 bp overlap
NR4A2::RXRA 1 dataset
Motif ES_0h ES_0h-NR4A2RXRA_MA1147.2 13 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 285 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 631 bp overlap
POU1F1 2 datasets
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F3 2 datasets
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 2 datasets
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU5F1 10 datasets
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 685 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 367 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 831 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 169 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 213 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 245 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 664 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 238 bp overlap
Plagl1 1 dataset
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Pou5f1::Sox2 4 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 605 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 160 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA1556.1 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 224 bp overlap
SATB1 1 dataset
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 110 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 284 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 250 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 780 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 696 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 683 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 597 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 632 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 408 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 339 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 334 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 278 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 203 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 328 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 300 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 755 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 579 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TFCP2 1 dataset
Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 245 bp overlap
TWIST1 1 dataset
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 134 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 419 bp overlap
ZBTB6 1 dataset
Motif ES_0h ES_0h-ZBTB6_MA1581.2 9 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 166 bp overlap
ZNF140 1 dataset
Motif ES_0h ES_0h-ZNF140_MA1589.2 19 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 307 bp overlap
ZNF354A 1 dataset
Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 391 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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