chr13 : 28,141,465 28,142,148
683 bp 153 TFs 2 linked genes
This 683 bp open chromatin element is linked to PAN3 and PAN3-AS1 and is bound by 153 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PAN3 2.9 kb Proximal Proximity
PAN3-AS1 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:28,136,465 – 28,147,148
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
153 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP L826 GSE83671.AFF1.L826 617 bp overlap
ALX3 1 dataset
Motif DE_72h DE_72h-ALX3_MA0634.2 6 bp overlap
ARGFX 1 dataset
Motif DE_72h DE_72h-ARGFX_MA1463.2 8 bp overlap
ASCL1 1 dataset
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
Alx1 1 dataset
Motif DE_72h DE_72h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_72h DE_72h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_72h DE_72h-Arx_MA0874.2 10 bp overlap
BCL6B 1 dataset
Motif DE_72h DE_72h-BCL6B_MA0731.1 17 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF521IZR 270 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 310 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD2.THP-1_iBET-BD2-PMA 304 bp overlap
BRD3 6 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 406 bp overlap
ChIP MV4-11_IBET151_5000nM GSE120715.BRD3.MV4-11_IBET151_5000nM 366 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 373 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 412 bp overlap
ChIP THP-1_DMSO GSE138084.BRD3.THP-1_DMSO 419 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD3.THP-1_iBET-BD2 402 bp overlap
BRD4 9 datasets
ChIP HCT-15 GSE73319.BRD4.HCT-15 366 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 290 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 98 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 353 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 164 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 69 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 476 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 536 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 474 bp overlap
CDK8 2 datasets
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 255 bp overlap
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 63 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DRGX 1 dataset
Motif DE_72h DE_72h-DRGX_MA1481.2 6 bp overlap
E2F6 3 datasets
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 451 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 211 bp overlap
E2F8 1 dataset
Motif DE_72h DE_72h-E2F8_MA0865.3 9 bp overlap
EMX1 1 dataset
Motif DE_72h DE_72h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif DE_72h DE_72h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif DE_72h DE_72h-EN1_MA0027.3 6 bp overlap
EN2 1 dataset
Motif DE_72h DE_72h-EN2_MA0642.3 7 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 127 bp overlap
ERF::FOXO1 2 datasets
Motif DE_36h DE_36h-ERFFOXO1_MA1936.2 12 bp overlap
Motif DE_72h DE_72h-ERFFOXO1_MA1936.2 12 bp overlap
ESX1 1 dataset
Motif DE_72h DE_72h-ESX1_MA0644.3 7 bp overlap
ETS1 2 datasets
Motif DE_36h DE_36h-ETS1_MA0098.4 9 bp overlap
Motif DE_72h DE_72h-ETS1_MA0098.4 9 bp overlap
ETS2 2 datasets
Motif DE_36h DE_36h-ETS2_MA1484.2 9 bp overlap
Motif DE_72h DE_72h-ETS2_MA1484.2 9 bp overlap
ETV1 2 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_72h DE_72h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif DE_72h DE_72h-ETV2FOXI1_MA1942.2 11 bp overlap
EVX1 1 dataset
Motif DE_72h DE_72h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif DE_72h DE_72h-EVX2_MA0888.2 6 bp overlap
Erg 1 dataset
Motif DE_72h DE_72h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 2 datasets
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 9 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 171 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 104 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 142 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 145 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 241 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 276 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 486 bp overlap
ChIP breast_tumor_Male_3 GSE104399.FOXA1.breast_tumor_Male_3 334 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 124 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 226 bp overlap
ChIP DE DE-FOXA2-1 683 bp overlap
ChIP DE DE-FOXA2-2 683 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 186 bp overlap
GABPA 1 dataset
Motif DE_72h DE_72h-GABPA_MA0062.4 10 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 190 bp overlap
ChIP DE DE-GATA4-1 515 bp overlap
ChIP DE DE-GATA4-2 609 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 636 bp overlap
ChIP DE DE-GATA6-2 543 bp overlap
GBX1 1 dataset
Motif DE_72h DE_72h-GBX1_MA0889.2 7 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
GSX1 1 dataset
Motif DE_72h DE_72h-GSX1_MA0892.2 6 bp overlap
GSX2 1 dataset
Motif DE_72h DE_72h-GSX2_MA0893.3 7 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 261 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HOXA1 1 dataset
Motif DE_72h DE_72h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif DE_72h DE_72h-HOXA2_MA0900.3 6 bp overlap
HOXA3 1 dataset
Motif DE_72h DE_72h-HOXA3_MA2119.1 7 bp overlap
HOXB1 1 dataset
Motif DE_72h DE_72h-HOXB1_MA2093.1 7 bp overlap
HOXB2 1 dataset
Motif DE_72h DE_72h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif DE_72h DE_72h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif DE_72h DE_72h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif DE_72h DE_72h-HOXC8_MA1505.2 6 bp overlap
HOXD3 1 dataset
Motif DE_72h DE_72h-HOXD3_MA0912.2 8 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 215 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 260 bp overlap
ISX 1 dataset
Motif DE_72h DE_72h-ISX_MA0654.2 6 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 423 bp overlap
KLF14 1 dataset
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KMT2A 10 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 329 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 683 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 97 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 132 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 254 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 210 bp overlap
ChIP L826 GSE83671.KMT2A.L826 462 bp overlap
ChIP MOLM-13_VTP-d3-180110 GSE127507.KMT2A.MOLM-13_VTP-d3-180110 340 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 403 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 374 bp overlap
LBX1 1 dataset
Motif DE_72h DE_72h-LBX1_MA0618.2 7 bp overlap
LHX5 1 dataset
Motif DE_72h DE_72h-LHX5_MA1519.2 7 bp overlap
LHX6 1 dataset
Motif DE_72h DE_72h-LHX6_MA0658.2 8 bp overlap
LHX9 1 dataset
Motif DE_72h DE_72h-LHX9_MA0701.3 7 bp overlap
LMX1A 1 dataset
Motif DE_72h DE_72h-LMX1A_MA0702.3 7 bp overlap
LMX1B 1 dataset
Motif DE_72h DE_72h-LMX1B_MA0703.3 8 bp overlap
Lhx1 1 dataset
Motif DE_72h DE_72h-Lhx1_MA1518.3 10 bp overlap
Lhx4 1 dataset
Motif DE_72h DE_72h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif DE_72h DE_72h-Lhx8_MA0705.2 6 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 175 bp overlap
MAZ 1 dataset
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 481 bp overlap
MED1 3 datasets
ChIP AML GSE154985.MED1.AML 571 bp overlap
ChIP MOLM-13 GSE154985.MED1.MOLM-13 536 bp overlap
ChIP MOLM-14_DHE GSE124963.MED1.MOLM-14_DHE 413 bp overlap
MEN1 2 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 335 bp overlap
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 432 bp overlap
MEOX1 1 dataset
Motif DE_72h DE_72h-MEOX1_MA0661.2 7 bp overlap
MEOX2 1 dataset
Motif DE_72h DE_72h-MEOX2_MA0706.2 7 bp overlap
MIXL1 1 dataset
Motif DE_72h DE_72h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif DE_72h DE_72h-MNX1_MA0707.3 6 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 435 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 244 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 136 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 244 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 307 bp overlap
NFKB1 1 dataset
Motif DE_72h DE_72h-NFKB1_MA0105.4 13 bp overlap
NKRF 1 dataset
ChIP GM12878 ENCFF392NLB 431 bp overlap
NKX6-1 1 dataset
Motif DE_72h DE_72h-NKX6-1_MA0674.2 7 bp overlap
NKX6-2 1 dataset
Motif DE_72h DE_72h-NKX6-2_MA0675.2 6 bp overlap
NOTO 1 dataset
Motif DE_72h DE_72h-NOTO_MA0710.2 7 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 2 datasets
Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX4 1 dataset
Motif DE_72h DE_72h-PAX4_MA0068.2 8 bp overlap
PDX1 1 dataset
Motif DE_72h DE_72h-PDX1_MA0132.3 6 bp overlap
PGR 2 datasets
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
Motif DE_72h DE_72h-PGR_MA2327.1 9 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 52 bp overlap
PHOX2B 1 dataset
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
PKNOX1 4 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 99 bp overlap
ChIP HEK293T ENCFF174WDB 84 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 129 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 198 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 441 bp overlap
POU6F1 1 dataset
Motif DE_72h DE_72h-POU6F1_MA0628.2 6 bp overlap
PRRX1 1 dataset
Motif DE_72h DE_72h-PRRX1_MA0716.2 6 bp overlap
PRRX2 1 dataset
Motif DE_72h DE_72h-PRRX2_MA0075.4 7 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 251 bp overlap
RAX2 1 dataset
Motif DE_72h DE_72h-RAX2_MA0717.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SHOX 1 dataset
Motif DE_72h DE_72h-SHOX_MA0630.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 606 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 343 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 391 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 158 bp overlap
SP4 1 dataset
Motif DE_72h DE_72h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_72h DE_72h-SREBF2_MA0828.3 10 bp overlap
Shox2 1 dataset
Motif DE_72h DE_72h-Shox2_MA0720.2 6 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 220 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP hESC GSE122298.TBP.hESC 165 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 234 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
TCF7L2 2 datasets
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TLX2 1 dataset
Motif DE_72h DE_72h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif DE_72h DE_72h-UNCX_MA0721.2 6 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 275 bp overlap
USF2 1 dataset
ChIP H1 ENCFF434EDF 277 bp overlap
VAX1 1 dataset
Motif DE_72h DE_72h-VAX1_MA0722.2 7 bp overlap
VAX2 1 dataset
Motif DE_72h DE_72h-VAX2_MA0723.3 6 bp overlap
VSX1 1 dataset
Motif DE_72h DE_72h-VSX1_MA0725.2 7 bp overlap
VSX2 1 dataset
Motif DE_72h DE_72h-VSX2_MA0726.2 7 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZEB1 2 datasets
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF135 2 datasets
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF148 1 dataset
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF175 2 datasets
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
Motif DE_72h DE_72h-ZNF175_MA2332.1 9 bp overlap
ZNF213 1 dataset
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF317 1 dataset
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 215 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 134 bp overlap
ZNF460 1 dataset
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 197 bp overlap
ZNF770 1 dataset
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ZNF784 1 dataset
Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap
Zfx 1 dataset
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap
mix-a 1 dataset
Motif DE_72h DE_72h-mix-a_MA0621.2 7 bp overlap