chr12 : 18,454,373 18,454,715
342 bp 116 TFs 0 linked genes
This 342 bp open chromatin element has no linked target genes and is bound by 116 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:18,449,373 – 18,459,715
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
116 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 317 bp overlap
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 303 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 157 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 187 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 151 bp overlap
BHLHE40 3 datasets
Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 165 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 155 bp overlap
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 183 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 342 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 323 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 287 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 326 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 342 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 150 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 340 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 199 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 137 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 246 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 220 bp overlap
GATA6 5 datasets
ChIP AGS GSE51936.GATA6.AGS 133 bp overlap
ChIP DE DE-GATA6-2 284 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 342 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 342 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 267 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 120 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 203 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 201 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 342 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 326 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 280 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 227 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 187 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 251 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 4 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF601FOM 294 bp overlap
ChIP H1 ENCFF914VQY 288 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 295 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 314 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MITF 7 datasets
ChIP 501-mel GSE137522.MITF.501-mel 342 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 272 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 339 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 339 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 268 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 187 bp overlap
MLX 1 dataset
Motif DE_12h DE_12h-MLX_MA0663.1 10 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 332 bp overlap
MTF1 1 dataset
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 292 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 201 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 342 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 342 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 263 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 342 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 342 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 342 bp overlap
ChIP hESC GSE18292.NANOG.hESC 203 bp overlap
ChIP hESC GSE20650.NANOG.hESC 256 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 342 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 341 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 164 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 300 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 301 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 157 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 240 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 342 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 242 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 235 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 342 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 342 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 342 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 342 bp overlap
RELA 1 dataset
ChIP LNCaP_DHT_TNFA GSE83860.RELA.LNCaP_DHT_TNFA 153 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 181 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 233 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 342 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 342 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 342 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 236 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 314 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 292 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 342 bp overlap
ChIP NPC GSE122631.SOX2.NPC 188 bp overlap
ChIP hESC GSE69479.SOX2.hESC 213 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 307 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
SPI1 1 dataset
ChIP NB4 GSE128834.SPI1.NB4 171 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 324 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 194 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 107 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 322 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFE3 1 dataset
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
TP63 1 dataset
Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
USF1 6 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 213 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 145 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 193 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 273 bp overlap
ChIP WTC11 ENCFF699QGS 315 bp overlap
USF2 5 datasets
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 234 bp overlap
ChIP H1 ENCFF434EDF 268 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 210 bp overlap
ChIP WTC11 ENCFF139JAW 257 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF35 1 dataset
Motif DE_12h DE_12h-ZNF35_MA2333.1 7 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 224 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 285 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap