chr12 : 6,057,641 6,058,085
444 bp 86 TFs 0 linked genes
This 444 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:6,052,641 – 6,063,085
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 204 bp overlap
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 258 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 176 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 278 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 335 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 444 bp overlap
ChIP H1 ENCFF399KAM 249 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 432 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 387 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 202 bp overlap
BACH1 3 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP H1 ENCFF282VDB 159 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 224 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 444 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 444 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 444 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 265 bp overlap
BRD4 3 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 193 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 169 bp overlap
ChIP hESC GSE33281.BRD4.hESC 133 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 228 bp overlap
ChIP WTC11 ENCFF113HIY 429 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 202 bp overlap
CREB1 3 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 202 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 121 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 287 bp overlap
CTCF 63 datasets
ChIP AG04449 ENCFF248MBD 172 bp overlap
ChIP GM23338 ENCFF531QOI 183 bp overlap
ChIP GM23338 ENCFF832KWE 408 bp overlap
ChIP GM23338 ENCFF832KWE 209 bp overlap
ChIP H1 ENCFF230QSV 156 bp overlap
ChIP H1 ENCFF414GZI 169 bp overlap
ChIP H1 ENCFF764RHO 217 bp overlap
ChIP H9 ENCFF152GTF 251 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 120 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 209 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 128 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 238 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 209 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 219 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 281 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 204 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 93 bp overlap
ChIP brain ENCFF685VRG 346 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 195 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 162 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 181 bp overlap
ChIP chondrocyte ENCFF134ORZ 281 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 163 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 132 bp overlap
ChIP endodermal cell ENCFF471YCZ 310 bp overlap
ChIP endothelial cell ENCFF663LIE 330 bp overlap
ChIP endothelial cell ENCFF663LIE 130 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 234 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 210 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 183 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 126 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 141 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 444 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 210 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 326 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 246 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 365 bp overlap
ChIP heart right ventricle ENCFF027ORH 350 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 241 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 151 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 187 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 173 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 115 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 173 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 179 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 210 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 286 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 392 bp overlap
ChIP nephron ENCFF411ACD 287 bp overlap
ChIP nephron ENCFF589HXU 296 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 320 bp overlap
ChIP neural crest cell ENCFF182LWK 208 bp overlap
ChIP neural progenitor cell ENCFF420RBO 196 bp overlap
ChIP neural progenitor cell ENCFF581WPG 186 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 281 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 128 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 226 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 76 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 278 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 298 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 219 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 263 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 242 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 418 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 396 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 230 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 283 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 222 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 204 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 239 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 304 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 152 bp overlap
EZH2 1 dataset
ChIP H1 ENCFF232NZA 127 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 203 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 241 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 444 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 159 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 444 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 399 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 249 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 54 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 126 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 195 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 346 bp overlap
JUN 2 datasets
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 333 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 444 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 427 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 165 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 232 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 167 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 223 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 323 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 363 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 444 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 136 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 324 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 178 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 410 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 378 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 444 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 294 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 404 bp overlap
ChIP spleen ENCFF706IUS 444 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 421 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 444 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 440 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 251 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 133 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 369 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 325 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 190 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 249 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 189 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 180 bp overlap
ChIP H1 ENCFF967OJF 189 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 232 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 119 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 444 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 382 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 332 bp overlap
RNF2 2 datasets
ChIP WA01 GSE104690.RNF2.WA01 434 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 217 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 299 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 444 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 267 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 200 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 375 bp overlap
ChIP H1 ENCFF042ZSL 52 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 126 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 189 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 296 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 162 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 272 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 325 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 394 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 310 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 266 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 406 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 342 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 444 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 381 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 414 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 162 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 424 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 168 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 354 bp overlap
SUZ12 3 datasets
ChIP WA01 ENCSR000ATS.SUZ12.WA01 359 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 222 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 212 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 151 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 336 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 272 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 140 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 444 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 444 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 325 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 353 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 194 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 258 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 311 bp overlap
ChIP NT2/D1 ENCFF999MII 254 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 283 bp overlap
ZBTB4 1 dataset
ChIP HepG2 ENCFF828GZH 422 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 267 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 423 bp overlap
ZNF263 3 datasets
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 232 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 277 bp overlap
ChIP WTC11 ENCFF893RTM 410 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 163 bp overlap