chr11 : 44,305,859 44,306,181
322 bp 92 TFs 1 linked gene
This 322 bp open chromatin element is linked to ALX4 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ALX4 4.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:44,300,859 – 44,311,181
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 215 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 322 bp overlap
ARID2 2 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 229 bp overlap
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 81 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 322 bp overlap
ATF3 1 dataset
ChIP Hep-G2 ENCSR402ZCY.ATF3.Hep-G2 168 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 69 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 322 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 322 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 156 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 322 bp overlap
BRD2 8 datasets
ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 253 bp overlap
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 322 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 322 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 212 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 322 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 322 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 322 bp overlap
ChIP SUM149PT_R_JQ1 GSE131097.BRD2.SUM149PT_R_JQ1 79 bp overlap
BRD4 9 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 322 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 215 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 290 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 194 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 322 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 322 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 142 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 322 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 233 bp overlap
CBX2 1 dataset
ChIP HepG2 ENCFF838BNI 302 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 189 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 209 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 261 bp overlap
ChIP H1 ENCFF095JHA 322 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF998XEK 322 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 322 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 202 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 172 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 322 bp overlap
ChIP H1 ENCFF329MAX 322 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 322 bp overlap
CTCF 10 datasets
ChIP A673 ENCFF123WOM 66 bp overlap
ChIP B cell ENCFF506FKC 65 bp overlap
ChIP BJ ENCFF434HEC 67 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 68 bp overlap
ChIP MM.1S ENCFF869JMQ 59 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 55 bp overlap
ChIP SK-N-SH ENCFF575DMG 57 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 77 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 67 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 69 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 70 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 322 bp overlap
ELF1 1 dataset
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 79 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 288 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 52 bp overlap
EZH2 35 datasets
ChIP B cell ENCFF803EMO 87 bp overlap
ChIP B cell ENCFF803EMO 293 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 275 bp overlap
ChIP GM23248 ENCFF404ZHM 131 bp overlap
ChIP GM23248 ENCFF506FWX 322 bp overlap
ChIP GM23338 ENCFF613YON 322 bp overlap
ChIP GM23338 ENCFF886DXX 322 bp overlap
ChIP H1 ENCFF232NZA 322 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 322 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 322 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 322 bp overlap
ChIP HepG2 ENCFF912EIW 242 bp overlap
ChIP HepG2 ENCFF912EIW 257 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 322 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 322 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 322 bp overlap
ChIP SK-N-SH ENCFF657FZK 74 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 258 bp overlap
ChIP astrocyte ENCFF365JTP 322 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 322 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 322 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 322 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 313 bp overlap
ChIP fibroblast of lung ENCFF479BAW 322 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 322 bp overlap
ChIP hESC GSE113817.EZH2.hESC 322 bp overlap
ChIP hepatocyte ENCFF552DZB 322 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 168 bp overlap
ChIP keratinocyte ENCFF070STK 322 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 165 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 105 bp overlap
ChIP myotube ENCFF857GWB 206 bp overlap
ChIP neural progenitor cell ENCFF018MKA 322 bp overlap
ChIP neural progenitor cell ENCFF472NFV 322 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 225 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 308 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 249 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 226 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 218 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 145 bp overlap
HDAC6 2 datasets
ChIP GM12878 ENCFF918SGD 318 bp overlap
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 159 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 212 bp overlap
HIF1A 2 datasets
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 213 bp overlap
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 322 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 300 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 300 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE97411.INO80.Hep-G2 223 bp overlap
IRF1 10 datasets
ChIP AsPC-1 GSE141606.IRF1.AsPC-1 184 bp overlap
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 257 bp overlap
ChIP AsPC-1_ZBED2-cDNA GSE141606.IRF1.AsPC-1_ZBED2-cDNA 196 bp overlap
ChIP CD14_LPS GSE43036.IRF1.CD14_LPS 112 bp overlap
ChIP HAEC_IL1b_4h GSE89970.IRF1.HAEC_IL1b_4h 138 bp overlap
ChIP HAEC_TNFa_4h GSE89970.IRF1.HAEC_TNFa_4h 139 bp overlap
ChIP K-562 ENCSR854MCV.IRF1.K-562 322 bp overlap
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 157 bp overlap
ChIP K562 ENCFF277KTJ 62 bp overlap
ChIP K562 ENCFF277KTJ 322 bp overlap
IRF2 3 datasets
ChIP CD34_ADULT GSE70660.IRF2.CD34_ADULT 100 bp overlap
ChIP K-562 ENCSR376WCJ.IRF2.K-562 94 bp overlap
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 322 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 196 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 102 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 271 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 262 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 216 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 322 bp overlap
ChIP SHI-1 GSE95511.KMT2A.SHI-1 149 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 68 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 165 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 322 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 161 bp overlap
MYC 1 dataset
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 101 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 189 bp overlap
NANOG 2 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 94 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 142 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 130 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 163 bp overlap
OGG1 1 dataset
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 283 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 143 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 196 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 262 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 249 bp overlap
POLR2A 3 datasets
ChIP spleen ENCFF446ZGT 142 bp overlap
ChIP vagina ENCFF384GAB 233 bp overlap
ChIP vagina ENCFF384GAB 322 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 204 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 322 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 251 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 322 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 322 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 322 bp overlap
RELA 2 datasets
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 252 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 128 bp overlap
RNF2 5 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 322 bp overlap
ChIP H1 ENCFF239FFS 322 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 50 bp overlap
ChIP K562 ENCFF653BQJ 72 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 138 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 196 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 258 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 159 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 159 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 155 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 213 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 322 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 84 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 322 bp overlap
SMARCA4 5 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 322 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 322 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 322 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 311 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 169 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 322 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 237 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 159 bp overlap
SNAI2 3 datasets
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 294 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.SNAI2.PC-9_1DF_DMSO 64 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.SNAI2.PC-9_2DF_DMSO 180 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 157 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 322 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 271 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 322 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 154 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 150 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 293 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 157 bp overlap
SUZ12 14 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 52 bp overlap
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 138 bp overlap
ChIP GM12878 ENCFF498QAM 160 bp overlap
ChIP GM12878 ENCFF498QAM 299 bp overlap
ChIP H1 ENCFF507HGF 219 bp overlap
ChIP H1 ENCFF881NFR 322 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 154 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 114 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 322 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 322 bp overlap
ChIP NT2/D1 ENCFF574SXS 322 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 322 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 322 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.SUZ12.hiPSC_WTb_RNase-neg 305 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 135 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 322 bp overlap
TP53 2 datasets
ChIP GM06170 GSE55727.TP53.GM06170 322 bp overlap
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 62 bp overlap
TP63 3 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 181 bp overlap
ChIP foreskin GSE126390.TP63.foreskin 167 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 128 bp overlap
ZBTB33 4 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 245 bp overlap
ChIP K562 ENCFF427SDV 204 bp overlap
ChIP K562 ENCFF875HLX 200 bp overlap
ChIP K562 ENCFF875HLX 322 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 322 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 322 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 232 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 180 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 163 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 185 bp overlap
ZNF777 2 datasets
ChIP Hep-G2 ENCSR068ZQR.ZNF777.Hep-G2 244 bp overlap
ChIP HepG2 ENCFF362XDA 322 bp overlap