chr9 : 72,114,422 – 72,115,062
640 bp 84 TFs 1 linked gene
This 640 bp open chromatin element is linked to GDA and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GDA at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:72,109,422 – 72,120,062
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP K562 ENCFF751HCS 505 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 350 bp overlap
ChIP K562 ENCFF817JQF 510 bp overlap
ATF7 2 datasets
ChIP K-562 ENCSR972ZBV.ATF7.K-562 248 bp overlap
ChIP K562 ENCFF308SKS 481 bp overlap
Ahr::Arnt 4 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BRD2 4 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 273 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 319 bp overlap
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 315 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 201 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 330 bp overlap
BRD4 4 datasets
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 264 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 329 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 176 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 305 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 439 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000EHE.CEBPB.K-562 131 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 233 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 446 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 196 bp overlap
E2F1 3 datasets
ChIP K-562 ENCSR563LLO.E2F1.K-562 417 bp overlap
ChIP K562 ENCFF163BSY 207 bp overlap
ChIP K562 ENCFF163BSY 451 bp overlap
E2F2 2 datasets
Motif DE_12h DE_12h-E2F2_MA0864.3 13 bp overlap
Motif DE_24h DE_24h-E2F2_MA0864.3 13 bp overlap
E2F4 2 datasets
ChIP K-562 ENCSR000EWL.E2F4.K-562 243 bp overlap
ChIP K-562 ENCSR000EWL.E2F4.K-562 155 bp overlap
E2F6 9 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_24h DE_24h-E2F6_MA0471.3 8 bp overlap
Motif DE_36h DE_36h-E2F6_MA0471.3 8 bp overlap
Motif ES_0h ES_0h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 397 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 466 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 260 bp overlap
ChIP K562 ENCFF136LTS 180 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 159 bp overlap
E2F8 2 datasets
ChIP K-562 ENCSR953DVM.E2F8.K-562 614 bp overlap
ChIP K562 ENCFF985IKY 416 bp overlap
E4F1 2 datasets
ChIP K-562 ENCSR731LHZ.E4F1.K-562 640 bp overlap
ChIP K562 ENCFF622HMZ 263 bp overlap
ELF4 2 datasets
ChIP K562 ENCFF454SBL 350 bp overlap
ChIP K562 ENCFF454SBL 465 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 323 bp overlap
ESR1 14 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 76 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 135 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 66 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 273 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 244 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 241 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 175 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 210 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 279 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 103 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 104 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 104 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 409 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 65 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 227 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 271 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR508DQA.FOXK2.K-562 301 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 310 bp overlap
ChIP K562 ENCFF015GDS 214 bp overlap
HDAC1 2 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 465 bp overlap
ChIP K562 ENCFF968WBH 521 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 297 bp overlap
HDGF 2 datasets
ChIP K-562 ENCSR563YDA.HDGF.K-562 269 bp overlap
ChIP K-562 ENCSR197ALX.HDGF.K-562 280 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 269 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 369 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 558 bp overlap
ChIP K562 ENCFF320EQC 504 bp overlap
MAX 2 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 98 bp overlap
ChIP K562 ENCFF524IJO 379 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 443 bp overlap
MNT 1 dataset
ChIP K-562 ENCSR512NLO.MNT.K-562 290 bp overlap
MTA3 1 dataset
ChIP K-562 ENCSR180NCY.MTA3.K-562 397 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 150 bp overlap
NBN 1 dataset
ChIP K-562 ENCSR085QEV.NBN.K-562 293 bp overlap
NELFA 2 datasets
ChIP K-562_HS GSE112379.NELFA.K-562_HS 461 bp overlap
ChIP K-562_NHS GSE112379.NELFA.K-562_NHS 324 bp overlap
NELFE 2 datasets
ChIP K-562_HS GSE112379.NELFE.K-562_HS 257 bp overlap
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 300 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 213 bp overlap
NR2C2 3 datasets
ChIP K562 ENCFF750AXF 640 bp overlap
ChIP K562 ENCFF750AXF 640 bp overlap
ChIP K562 ENCFF750AXF 472 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 69 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF689EWI 435 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 273 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 408 bp overlap
ChIP K562 ENCFF217UCA 221 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 350 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 378 bp overlap
POLR2A 4 datasets
ChIP K562 ENCFF215CWW 476 bp overlap
ChIP K562 ENCFF262YXJ 278 bp overlap
ChIP K562 ENCFF514URW 405 bp overlap
ChIP K562 ENCFF836GHX 352 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 153 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 314 bp overlap
ChIP K562 ENCFF648YPL 298 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 636 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap
RAD21 1 dataset
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 74 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 508 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 508 bp overlap
RBM39 2 datasets
ChIP K-562 ENCSR764OXF.RBM39.K-562 272 bp overlap
ChIP K-562 GSE120104.RBM39.K-562 239 bp overlap
RXRB 4 datasets
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
Motif DE_24h DE_24h-RXRB_MA1555.1 14 bp overlap
Motif DE_36h DE_36h-RXRB_MA1555.1 14 bp overlap
Motif ES_0h ES_0h-RXRB_MA1555.1 14 bp overlap
RXRG 4 datasets
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA1556.1 14 bp overlap
Motif DE_36h DE_36h-RXRG_MA1556.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA1556.1 14 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 221 bp overlap
ChIP K562 ENCFF941FJJ 187 bp overlap
SMARCA4 4 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 376 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 471 bp overlap
ChIP K562 ENCFF316MCJ 333 bp overlap
ChIP K562 ENCFF316MCJ 485 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 75 bp overlap
SP2 4 datasets
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
Motif DE_24h DE_24h-SP2_MA0516.3 9 bp overlap
Motif DE_36h DE_36h-SP2_MA0516.3 9 bp overlap
Motif ES_0h ES_0h-SP2_MA0516.3 9 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 3 datasets
ChIP K-562 GSE70482.SPI1.K-562 101 bp overlap
ChIP K562 ENCFF410ORC 88 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
SREBF2 3 datasets
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Motif DE_36h DE_36h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 376 bp overlap
TAF1 2 datasets
ChIP K-562 ENCSR000BKS.TAF1.K-562 132 bp overlap
ChIP K562 ENCFF491WAE 397 bp overlap
TBP 2 datasets
ChIP K-562 GSE55306.TBP.K-562 159 bp overlap
ChIP K562 ENCFF901UYM 344 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCFF467DDW 78 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 391 bp overlap
TFDP1 3 datasets
ChIP K-562 ENCSR017GBO.TFDP1.K-562 264 bp overlap
ChIP K562 ENCFF584VSB 453 bp overlap
ChIP K562 ENCFF794ZXJ 606 bp overlap
TRIM24 1 dataset
ChIP K-562 ENCSR907MZR.TRIM24.K-562 253 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 233 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 233 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 98 bp overlap
ZBTB2 1 dataset
ChIP K-562 ENCSR230PTV.ZBTB2.K-562 248 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF169LZT 591 bp overlap
ZKSCAN5 1 dataset
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF135 6 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 137 bp overlap
ZNF257 5 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF384 2 datasets
ChIP K-562 ENCSR000EFP.ZNF384.K-562 256 bp overlap
ChIP K562 ENCFF365NXQ 124 bp overlap
ZNF460 6 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF770 4 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_24h DE_24h-ZNF770_MA2099.1 8 bp overlap
Motif DE_36h DE_36h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
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