chr1 : 169,915,003 – 169,915,448

445 bp 91 TFs 1 linked gene

This 445 bp open chromatin element is linked to ENSG00000288139 and is bound by 91 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000288139		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

91 transcription factors

AR 2 datasets

ChIP MCF-7 GSE48930.AR.MCF-7 154 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 310 bp overlap

ARID1B 1 dataset

ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 237 bp overlap

BHLHE22 2 datasets

ChIP CAL-1 GSE43876.BHLHE22.CAL-1 140 bp overlap

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP MM1-S GSE43743.BRD4.MM1-S 445 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 281 bp overlap

CBFB 1 dataset

ChIP ME-1 GSE46044.CBFB.ME-1 195 bp overlap

CDKN1B 1 dataset

ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 366 bp overlap

CTCF 2 datasets

ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 211 bp overlap

ChIP U-937 ERP008568.CTCF.U-937 392 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF262VBH 336 bp overlap

ChIP BLaER1 ENCFF335XTP 279 bp overlap

EBF1 3 datasets

ChIP GM12878 ENCFF167CZS 319 bp overlap

ChIP GM12878 ENCFF813OXE 265 bp overlap

ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 151 bp overlap

EED 1 dataset

ChIP GM12878 ENCFF266FYW 339 bp overlap

ELF3 2 datasets

ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 60 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 173 bp overlap

ERG 5 datasets

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 198 bp overlap

ChIP MCF-7 GSE23730.ERG.MCF-7 220 bp overlap

ChIP ME-1 GSE46044.ERG.ME-1 243 bp overlap

ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap

ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 270 bp overlap

ESR1 6 datasets

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 251 bp overlap

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 180 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 430 bp overlap

ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 198 bp overlap

ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 308 bp overlap

ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 329 bp overlap

ESR1_Y537S 1 dataset

ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 230 bp overlap

ETV3 1 dataset

Motif DE_12h DE_12h-ETV3_MA0763.2 9 bp overlap

EZH2 1 dataset

ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 327 bp overlap

EZH2_phosphoT487 1 dataset

ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 199 bp overlap

FLI1 2 datasets

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 209 bp overlap

ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 172 bp overlap

FOS 1 dataset

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 91 bp overlap

FOXA1 2 datasets

ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 407 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 175 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 445 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 183 bp overlap

HDAC2 1 dataset

ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 128 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 136 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

JUN 2 datasets

ChIP Karpas-299 GSE151413.JUN.Karpas-299 445 bp overlap

ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 158 bp overlap

JUNB 2 datasets

ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 158 bp overlap

ChIP Karpas-299 GSE151413.JUNB.Karpas-299 59 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 212 bp overlap

KLF3 1 dataset

Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap

MAF1 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 273 bp overlap

MED1 3 datasets

ChIP GM12878 GSE93080.MED1.GM12878 198 bp overlap

ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 158 bp overlap

ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 144 bp overlap

MEF2B 1 dataset

ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 337 bp overlap

MYC 1 dataset

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap

MYOG 1 dataset

Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap

NBN 1 dataset

ChIP GM12878 ENCSR278SQL.NBN.GM12878 220 bp overlap

NCAPH2 1 dataset

ChIP HEK293 GSE97540.NCAPH2.HEK293 153 bp overlap

NCOA3 1 dataset

ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 198 bp overlap

NHLH1 1 dataset

Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 102 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

OGG1 4 datasets

ChIP HEK293 GSE89017.OGG1.HEK293 302 bp overlap

ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 267 bp overlap

ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 266 bp overlap

ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 280 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PAX1 1 dataset

Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap

PAX2 1 dataset

Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap

PAX5 1 dataset

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 154 bp overlap

PHF19 1 dataset

ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 240 bp overlap

POLR2A 1 dataset

ChIP GM12878 ENCFF521FXC 216 bp overlap

POU5F1 1 dataset

ChIP BG03 GSE21614.POU5F1.BG03 220 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap

RBPJ 1 dataset

ChIP NHEK GSE29498.RBPJ.NHEK 355 bp overlap

RELA 1 dataset

ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 253 bp overlap

REST 1 dataset

Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap

RORC 1 dataset

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 212 bp overlap

RUNX1 3 datasets

ChIP AML GSE111821.RUNX1.AML 212 bp overlap

ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 374 bp overlap

ChIP Jurkat GSE85524.RUNX1.Jurkat 203 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 252 bp overlap

RXR 1 dataset

ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 202 bp overlap

SIN3A 1 dataset

ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 207 bp overlap

SMARCB1 2 datasets

ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 75 bp overlap

ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 60 bp overlap

SND1 1 dataset

ChIP NHEK GSE29498.SND1.NHEK 140 bp overlap

SPDEF 1 dataset

Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 255 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 226 bp overlap

STAT3 4 datasets

ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 208 bp overlap

ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 77 bp overlap

ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 74 bp overlap

ChIP WA01 ERP004237.STAT3.WA01 195 bp overlap

TAF1 2 datasets

ChIP GM12878 ENCFF746UKX 260 bp overlap

ChIP GM12878 ENCSR000BGS.TAF1.GM12878 246 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 116 bp overlap

TCF12 1 dataset

ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 282 bp overlap

TCF3 1 dataset

ChIP GM12878 ENCSR000BQT.TCF3.GM12878 172 bp overlap

TCF4 2 datasets

ChIP CAL-1 GSE76147.TCF4.CAL-1 239 bp overlap

ChIP GEN2-2 GSE76147.TCF4.GEN2-2 166 bp overlap

TEAD4 1 dataset

ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 368 bp overlap

TFIIIC 1 dataset

ChIP HEK293 GSE119418.TFIIIC.HEK293 261 bp overlap

TP63 1 dataset

ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 204 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

YY1 1 dataset

ChIP HEK293T_control GSE128106.YY1.HEK293T_control 239 bp overlap

ZBTB11 1 dataset

Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap

ZBTB24 1 dataset

Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 445 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 307 bp overlap

ZEB1 1 dataset

ChIP GM12878 ENCSR000BND.ZEB1.GM12878 125 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 412 bp overlap

ZNF300 1 dataset

ChIP HEK293T GSE78099.ZNF300.HEK293T 148 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

ZNF449 1 dataset

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

ZNF610 1 dataset

Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap

ZNF669 1 dataset

Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap