chr7 : 148,976,435 148,976,779
344 bp 105 TFs 1 linked gene
This 344 bp open chromatin element is linked to RNY3 and is bound by 105 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RNY3 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:148,971,435 – 148,981,779
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ADNP 3 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 125 bp overlap
ChIP K562 ENCFF492SKF 344 bp overlap
ChIP K562 ENCFF492SKF 193 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 264 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 153 bp overlap
ChIP K562 ENCFF674KTF 201 bp overlap
BCL6 2 datasets
ChIP HepG2 ENCFF423EJH 73 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 235 bp overlap
BCOR 3 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 132 bp overlap
ChIP K562 ENCFF343XWA 162 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 205 bp overlap
BRD3 3 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 226 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 225 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 177 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 225 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 249 bp overlap
CBX1 2 datasets
ChIP K-562 ENCSR948QLZ.CBX1.K-562 118 bp overlap
ChIP K562 ENCFF008KGK 262 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 148 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 196 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 251 bp overlap
ChIP K562 ENCFF403WPG 144 bp overlap
CTCF 6 datasets
ChIP K-562 GSE70482.CTCF.K-562 232 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 116 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 227 bp overlap
ChIP endodermal cell ENCFF471YCZ 275 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 165 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 59 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 85 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 295 bp overlap
ETV6 2 datasets
ChIP K562 ENCFF763GEA 262 bp overlap
ChIP K562 ENCFF763GEA 54 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 220 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 344 bp overlap
FOXP4 1 dataset
ChIP K562 ENCFF086EQT 275 bp overlap
GTF3C2 3 datasets
ChIP H9 GSE94418.GTF3C2.H9 306 bp overlap
ChIP K-562 ENCSR000DOD.GTF3C2.K-562 147 bp overlap
ChIP K562 ENCFF396ZJP 69 bp overlap
Gli1 1 dataset
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif ES_0h ES_0h-Gli2_MA0734.4 9 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 224 bp overlap
HMGXB4 4 datasets
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 317 bp overlap
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 169 bp overlap
ChIP K562 ENCFF620JLK 255 bp overlap
ChIP K562 ENCFF620JLK 52 bp overlap
IKZF1 5 datasets
ChIP GM12878 ENCFF753XDO 344 bp overlap
ChIP GM12878 ENCFF824TGK 344 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 344 bp overlap
ChIP K562 ENCFF348IBL 142 bp overlap
ChIP K562 ENCFF771OHZ 337 bp overlap
IKZF2 3 datasets
ChIP GM12878 ENCFF238LYK 344 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 217 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 134 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 248 bp overlap
IRF1 5 datasets
ChIP K-562 GSE129380.IRF1.K-562 295 bp overlap
ChIP K-562 ENCSR854MCV.IRF1.K-562 130 bp overlap
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 276 bp overlap
ChIP K562 ENCFF277KTJ 314 bp overlap
ChIP K562 ENCFF277KTJ 111 bp overlap
IRF2 1 dataset
ChIP K-562 ENCSR376WCJ.IRF2.K-562 192 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 344 bp overlap
KLF16 1 dataset
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 169 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 313 bp overlap
MAX 2 datasets
ChIP K562 ENCFF524IJO 253 bp overlap
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 140 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 2 datasets
ChIP K-562 ENCSR797SWM.MITF.K-562 163 bp overlap
ChIP K562 ENCFF731XJJ 138 bp overlap
NFYA 2 datasets
ChIP K562 ENCFF732HOX 285 bp overlap
ChIP K562 ENCFF732HOX 68 bp overlap
NR2C1 1 dataset
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 129 bp overlap
Nr1H2 1 dataset
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
PAX3 1 dataset
Motif ES_0h ES_0h-PAX3_MA1546.2 14 bp overlap
PAX5 1 dataset
Motif ES_0h ES_0h-PAX5_MA0014.4 8 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 344 bp overlap
ChIP H1 ENCFF566JSR 344 bp overlap
POU2F1 1 dataset
ChIP HepG2 ENCFF422JZU 344 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 229 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 289 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 339 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 155 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 344 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 235 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 150 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA1556.1 14 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 147 bp overlap
SMARCE1 2 datasets
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 109 bp overlap
ChIP K562 ENCFF690CFF 257 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 319 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 337 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 8 datasets
ChIP GM12878 ENCFF134LCP 251 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 240 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 186 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 224 bp overlap
ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 186 bp overlap
ChIP K562 ENCFF410ORC 83 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 234 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 97 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 237 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 57 bp overlap
Sox17 1 dataset
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 344 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TBP 10 datasets
ChIP H1 ENCFF859IIO 260 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 217 bp overlap
ChIP K-562 GSE55306.TBP.K-562 181 bp overlap
ChIP K562 ENCFF901UYM 292 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 258 bp overlap
ChIP hESC GSE122298.TBP.hESC 143 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 291 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 203 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 119 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 234 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 344 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 301 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 217 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 207 bp overlap
UBTF 2 datasets
ChIP HepG2 ENCFF424RNN 344 bp overlap
ChIP K-562 ENCSR000EFZ.UBTF.K-562 185 bp overlap
USF1 3 datasets
ChIP HepG2 ENCFF201JKA 64 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 112 bp overlap
ChIP K562 ENCFF202SFC 273 bp overlap
XRCC5 2 datasets
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 161 bp overlap
ChIP K-562 GSE120104.XRCC5.K-562 165 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 132 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 142 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 327 bp overlap
ZBTB43 1 dataset
ChIP K562 ENCFF722QWH 315 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 189 bp overlap
ZEB1 1 dataset
ChIP RKO GSE88734.ZEB1.RKO 121 bp overlap
ZEB2 4 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 298 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 281 bp overlap
ChIP K562 ENCFF795CMH 133 bp overlap
ChIP K562 ENCFF975RXS 269 bp overlap
ZFX 3 datasets
ChIP K562 ENCFF169LZT 344 bp overlap
ChIP K562 ENCFF536AJO 274 bp overlap
ChIP K562 ENCFF536AJO 68 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 239 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF143 3 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 214 bp overlap
ChIP WTC11 ENCFF249JUK 75 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 113 bp overlap
ZNF317 1 dataset
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 311 bp overlap
ZNF501 2 datasets
ChIP HepG2 ENCFF879XZR 344 bp overlap
ChIP HepG2 ENCFF879XZR 105 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 344 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 96 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap