chr6 : 52,498,914 52,499,334
420 bp 112 TFs 0 linked genes
This 420 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:52,493,914 – 52,504,334
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
112 transcription factors
Source
Cell type
AGO2 1 dataset
ChIP HepG2 ENCFF773YDL 278 bp overlap
AHR 2 datasets
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 115 bp overlap
ChIP GM01310_3MC GSE116632.AHR.GM01310_3MC 135 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 106 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 248 bp overlap
ARNT 3 datasets
ChIP GM12878 ENCFF831TWO 117 bp overlap
ChIP GM12878 ENCFF831TWO 397 bp overlap
ChIP GM12878 ENCSR590KEQ.ARNT.GM12878 300 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 232 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 222 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 71 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 57 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 192 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 221 bp overlap
BRD4 10 datasets
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 132 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 420 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 153 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 320 bp overlap
ChIP CLL_patient4_4h_CpG GSE109411.BRD4.CLL_patient4_4h_CpG 158 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 287 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 186 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 81 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 91 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 183 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCFF056JUS 198 bp overlap
CDK9 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 177 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 185 bp overlap
CHD2 1 dataset
ChIP GM12878 ENCFF697XCL 87 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 63 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 259 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 301 bp overlap
CREM 2 datasets
ChIP GM12878 ENCFF391UGE 174 bp overlap
ChIP GM12878 ENCSR839XZU.CREM.GM12878 76 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 259 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 235 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 268 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 372 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 370 bp overlap
CTCF 5 datasets
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 155 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 175 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 271 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 336 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 240 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 60 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 119 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF813OXE 78 bp overlap
EP300 2 datasets
ChIP GM12878 ENCFF039QRE 88 bp overlap
ChIP GM12878 ENCSR000BHB.EP300.GM12878 60 bp overlap
ETS1 1 dataset
ChIP HUVEC-C GSE41166.ETS1.HUVEC-C 177 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 77 bp overlap
FOSL2 4 datasets
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 216 bp overlap
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 79 bp overlap
ChIP HepG2 ENCFF796NIA 121 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 147 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 74 bp overlap
GATAD2B 2 datasets
ChIP GM12878 ENCFF781IAU 234 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 54 bp overlap
HMGB2 1 dataset
ChIP IMR-90_proliferating GSE98245.HMGB2.IMR-90_proliferating 222 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 100 bp overlap
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 142 bp overlap
IRF4 2 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 159 bp overlap
ChIP U266 GSE142493.IRF4.U266 75 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 420 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 420 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 420 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 367 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 415 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 420 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 420 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 420 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 135 bp overlap
JUND 2 datasets
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 170 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 128 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 263 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 230 bp overlap
MAZ 1 dataset
ChIP GM12878 ENCFF453CES 124 bp overlap
MED1 7 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 73 bp overlap
ChIP GM12878 GSE93080.MED1.GM12878 225 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 108 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 163 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 71 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 165 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 112 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 171 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 330 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 299 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 221 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 63 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 118 bp overlap
MYB 1 dataset
ChIP DU528 GSE94000.MYB.DU528 67 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 79 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 251 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 420 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 414 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 329 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 197 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 225 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 400 bp overlap
NFATC1 2 datasets
ChIP GM12878 ENCFF023CAZ 117 bp overlap
ChIP GM12878 ENCFF023CAZ 317 bp overlap
NFATC3 1 dataset
ChIP GM12878 ENCFF340KVJ 201 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 125 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 176 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 253 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 370 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 60 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCFF482PUW 55 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 106 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 130 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 248 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 163 bp overlap
ChIP GM12878 ENCFF160JQZ 366 bp overlap
POLR2A 8 datasets
ChIP GM12891 ENCFF012SUT 172 bp overlap
ChIP GM12891 ENCFF012SUT 373 bp overlap
ChIP GM18505 ENCFF311CYB 74 bp overlap
ChIP GM18505 ENCFF311CYB 288 bp overlap
ChIP HeLa-S3 ENCFF224LWS 179 bp overlap
ChIP HepG2 ENCFF252NAR 299 bp overlap
ChIP HepG2 ENCFF718XAJ 408 bp overlap
ChIP K562 ENCFF262YXJ 200 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 313 bp overlap
ChIP K562 ENCFF648YPL 313 bp overlap
PRDM1 2 datasets
ChIP HEK293 ENCFF302TBP 188 bp overlap
ChIP HEK293 ENCFF302TBP 263 bp overlap
RAD21 4 datasets
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 380 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 274 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 157 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 102 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 58 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 59 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 134 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 247 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 56 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 163 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 155 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 79 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 63 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 69 bp overlap
SAFB2 2 datasets
ChIP HepG2 ENCFF196QOW 302 bp overlap
ChIP HepG2 ENCFF196QOW 420 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 79 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 310 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 420 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 386 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 420 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 217 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 204 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 305 bp overlap
SP1 2 datasets
ChIP GM12878 ENCFF620LDJ 69 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 95 bp overlap
SP4 1 dataset
ChIP HepG2 ENCFF865DSQ 315 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 384 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 264 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 237 bp overlap
STAT5A 1 dataset
ChIP GM12878 ENCFF267JUM 327 bp overlap
STAT6 1 dataset
ChIP HepG2 ENCFF370LZV 356 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 186 bp overlap
TAF1 2 datasets
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 93 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 174 bp overlap
TBX5 2 datasets
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 163 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 163 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 76 bp overlap
TEAD1 1 dataset
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 226 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 172 bp overlap
TFEB 1 dataset
ChIP HUVEC-C GSE88894.TFEB.HUVEC-C 162 bp overlap
TP53 1 dataset
ChIP SaOS-2 GSE15780.TP53.SaOS-2 211 bp overlap
USF2 1 dataset
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 227 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 283 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 185 bp overlap
ZFP37 1 dataset
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 420 bp overlap
ZNF34 1 dataset
ChIP HepG2 ENCFF739BBD 297 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 246 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 318 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 371 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 278 bp overlap
ZNF687 3 datasets
ChIP GM12878 ENCFF233SGE 121 bp overlap
ChIP GM12878 ENCFF233SGE 333 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 63 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 145 bp overlap