chr1 : 108,877,991 – 108,878,337
346 bp 89 TFs 1 linked gene
This 346 bp open chromatin element is linked to GPSM2 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GPSM2 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:108,872,991 – 108,883,337
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa GSE40632.AFF4.HeLa 142 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 217 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 251 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 209 bp overlap
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 226 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 150 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD2.MDA-MB-231_MGSK2801 212 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_MGSK2801_rDNA 212 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 194 bp overlap
ChIP HCT-15 GSE73319.BRD4.HCT-15 346 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 75 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 247 bp overlap
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 108 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 78 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 346 bp overlap
BRD7 1 dataset
ChIP SUM159PT_DMSO GSE131097.BRD7.SUM159PT_DMSO 76 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 292 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 255 bp overlap
CBX8 4 datasets
ChIP K-562 ENCSR000ATW.CBX8.K-562 346 bp overlap
ChIP K-562_HS GSE121182.CBX8.K-562_HS 239 bp overlap
ChIP K562 ENCFF485TBL 346 bp overlap
ChIP K562 ENCFF485TBL 346 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 74 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 63 bp overlap
DMAP1 1 dataset
ChIP Hep-G2 ENCSR670YPQ.DMAP1.Hep-G2 171 bp overlap
E2F1 1 dataset
ChIP K562 ENCFF749FMR 249 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 97 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 63 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 117 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 69 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 259 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 172 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 189 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 189 bp overlap
EZH2 5 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 211 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 346 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 122 bp overlap
ChIP hepatocyte ENCFF552DZB 346 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 139 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 346 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 346 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 346 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 346 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
FOXM1 1 dataset
ChIP K-562 ENCSR429QPP.FOXM1.K-562 185 bp overlap
GATA1 9 datasets
ChIP K-562 GSE107726.GATA1.K-562 229 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 180 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 244 bp overlap
ChIP erythroblast ENCFF867JAR 291 bp overlap
ChIP erythroblast ENCFF867JAR 346 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 346 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 219 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 162 bp overlap
ChIP erythroid_Don003 GSE137982.GATA1.erythroid_Don003 203 bp overlap
GATA2 16 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 169 bp overlap
ChIP ESF GSE108408.GATA2.ESF 247 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 145 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 297 bp overlap
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 223 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 223 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 186 bp overlap
ChIP SH-SY5Y ENCFF485YIB 320 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 293 bp overlap
ChIP SK-N-SH ENCFF764OZD 319 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 341 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 253 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 276 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 242 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 245 bp overlap
GATA3 18 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 84 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 214 bp overlap
ChIP MCF-7 ENCFF178GBS 346 bp overlap
ChIP MCF-7 ENCFF352QVM 250 bp overlap
ChIP MCF-7 ENCFF437NQS 299 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 269 bp overlap
ChIP MCF-7 GSE128445.GATA3.MCF-7 208 bp overlap
ChIP MCF-7 ENCSR000EWS.GATA3.MCF-7 331 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 262 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 167 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 159 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 228 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 164 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 264 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 329 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 227 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 284 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 282 bp overlap
GATA3_Cter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Cter.T-47D_CR3flp 200 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 266 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 240 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 346 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 346 bp overlap
ChIP DE DE-GATA6-2 346 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 294 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 339 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCFF868VGE 243 bp overlap
HDAC1 2 datasets
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_clone14 206 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 127 bp overlap
HMBOX1 1 dataset
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 117 bp overlap
HOXB13 4 datasets
ChIP G-401 GSE65381.HOXB13.G-401 246 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 249 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 217 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 121 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 79 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 93 bp overlap
KMT2A 8 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 346 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 131 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 209 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 346 bp overlap
ChIP MCF-7_C-term_DMSO GSE90762.KMT2A.MCF-7_C-term_DMSO 103 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 209 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 346 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 321 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 346 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 161 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 218 bp overlap
MYC 1 dataset
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 346 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 346 bp overlap
NCOR1 1 dataset
ChIP K562 ENCFF866HRM 346 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 117 bp overlap
NR3C1 1 dataset
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 140 bp overlap
OSR2 2 datasets
ChIP HEK293 GSE76494.OSR2.HEK293 174 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 245 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 116 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 346 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 108 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 346 bp overlap
POU5F1 2 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 167 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 116 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 144 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 346 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 61 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 167 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 225 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 307 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 177 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 341 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 346 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 247 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 282 bp overlap
SMARCA4 10 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 290 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 258 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 346 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 282 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 104 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 194 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 264 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 152 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 236 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 346 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 186 bp overlap
SMARCC2 1 dataset
ChIP K-562 ENCSR519WMW.SMARCC2.K-562 148 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 173 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 96 bp overlap
ChIP HeLa-S3 ENCFF992MML 261 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 286 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 176 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 297 bp overlap
STAT1 1 dataset
ChIP NCI-H358 GSE79707.STAT1.NCI-H358 144 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5843 GSE126004.STAT3.MCF-7_jc5843 225 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 279 bp overlap
TAL1 1 dataset
ChIP CD34 GSE52924.TAL1.CD34 98 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 139 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 185 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 179 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 289 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 346 bp overlap
ZBTB7A 2 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 346 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 248 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 231 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 214 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 137 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 346 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 346 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 207 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 242 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 346 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 248 bp overlap
ZNF449 1 dataset
ChIP HEK293 ENCSR738SLS.ZNF449.HEK293 53 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 156 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 337 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 245 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 142 bp overlap
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