chr6 : 27,020,685 27,021,156
471 bp 88 TFs 2 linked genes
This 471 bp open chromatin element is linked to LINC00240 and LARRPM and is bound by 88 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC00240 361 bp At TSS Proximity
LARRPM 405 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:27,015,685 – 27,026,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 92 bp overlap
ChIP K562 ENCFF492SKF 410 bp overlap
AFF4 1 dataset
ChIP K562 ENCFF751HCS 169 bp overlap
AHR 1 dataset
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 86 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 208 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 72 bp overlap
BACH1 1 dataset
ChIP K562 ENCFF419VIM 244 bp overlap
BCOR 1 dataset
ChIP K562 ENCFF343XWA 73 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 285 bp overlap
BRD4 6 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 106 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 100 bp overlap
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 151 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 138 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 52 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 85 bp overlap
CC2D1A 1 dataset
ChIP K562 ENCFF567XUT 90 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF783ADE 134 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 117 bp overlap
CHD4 2 datasets
ChIP A-549 ENCSR550SCU.CHD4.A-549 238 bp overlap
ChIP K562 ENCFF933NKI 183 bp overlap
DDX20 2 datasets
ChIP K562 ENCFF205RDN 81 bp overlap
ChIP K562 ENCFF373BEC 162 bp overlap
EHMT2 1 dataset
ChIP A549 ENCFF026GWM 87 bp overlap
ELF1 1 dataset
ChIP K562 ENCFF886KFV 125 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 243 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCFF829RWA 128 bp overlap
ETS1 1 dataset
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 83 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 109 bp overlap
FOXA1 2 datasets
ChIP PDAC GSE64557.FOXA1.PDAC 93 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 81 bp overlap
FOXA2 1 dataset
ChIP PANC-1 GSE119930.FOXA2.PANC-1 73 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 90 bp overlap
FOXM1 1 dataset
ChIP K562 ENCFF490XGT 122 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR290MUH.GABPA.K-562 194 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 242 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 261 bp overlap
ChIP DE DE-GATA4-2 451 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 82 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 400 bp overlap
ChIP DE DE-GATA6-2 457 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 377 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 198 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 85 bp overlap
GTF2E2 1 dataset
ChIP K562 ENCFF741URT 181 bp overlap
HDAC8 1 dataset
ChIP K-562 ENCSR835TCD.HDAC8.K-562 249 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 57 bp overlap
HMGXB4 1 dataset
ChIP K562 ENCFF620JLK 55 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 98 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 267 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 56 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 86 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 226 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCFF995GXC 120 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 67 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 151 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 94 bp overlap
NR2C2 2 datasets
ChIP K562 ENCFF750AXF 100 bp overlap
ChIP K562 ENCFF750AXF 305 bp overlap
NR4A1 1 dataset
ChIP K562 ENCFF998LHF 137 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 182 bp overlap
ChIP K562 ENCFF610CJH 120 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 174 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 103 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 51 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 108 bp overlap
PREB 1 dataset
ChIP K562 ENCFF378WFY 72 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 132 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 459 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 51 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 201 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 57 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 64 bp overlap
TBP 3 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 456 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 258 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 120 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 254 bp overlap
TFDP1 3 datasets
ChIP K562 ENCFF584VSB 125 bp overlap
ChIP K562 ENCFF794ZXJ 166 bp overlap
ChIP K562 ENCFF794ZXJ 367 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 232 bp overlap
ChIP K562 ENCFF429WPG 66 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 148 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF875HLX 87 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 220 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 334 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 151 bp overlap
ZNF175 1 dataset
ChIP K562 ENCFF497AEJ 292 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 60 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 134 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCFF481TFV 102 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 51 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 146 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 106 bp overlap
ZNF431 1 dataset
ChIP K562 ENCFF431VZH 174 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF455WDH 177 bp overlap
ZNF579 1 dataset
ChIP MCF-7 ENCFF550XRS 100 bp overlap
ZNF644 1 dataset
ChIP K562 ENCFF290PDB 72 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF505NFV 235 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 140 bp overlap
ZZZ3 1 dataset
ChIP K562 ENCFF845XAO 89 bp overlap