chr6 : 3,423,549 3,424,168
619 bp 107 TFs 4 linked genes
This 619 bp open chromatin element is linked to 4 target genes and is bound by 107 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SLC22A23 33.2 kb Distal Multiome
PSMG4 192.1 kb Distal Multiome
TUBB2B 196.2 kb Distal Multiome
TUBB2A 266.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:3,418,549 – 3,429,168
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 619 bp overlap
BCOR 5 datasets
ChIP WA01 GSE104690.BCOR.WA01 166 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 254 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 132 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 393 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 427 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif ES_0h ES_0h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 515 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 184 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 403 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 429 bp overlap
CTCF 1 dataset
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 230 bp overlap
DMRTA1 2 datasets
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
Motif ES_0h ES_0h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 2 datasets
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 96 bp overlap
EP300 1 dataset
ChIP hESC GSE17917.EP300.hESC 249 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 98 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 281 bp overlap
ETS1 3 datasets
ChIP GM23338 ENCFF701IZH 308 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 140 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 188 bp overlap
Elf5 1 dataset
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FERD3L 1 dataset
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FIGLA 2 datasets
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 224 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 236 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 208 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 134 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 232 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 239 bp overlap
FOXA1 2 datasets
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 187 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 212 bp overlap
FOXN3 1 dataset
Motif ES_0h ES_0h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif ES_0h ES_0h-FOXP2_MA0593.2 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 161 bp overlap
HIC2 1 dataset
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
JUN 7 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 534 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 619 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 505 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 408 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 130 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 619 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 619 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 168 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 216 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 298 bp overlap
MSC 1 dataset
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MYOD1 1 dataset
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 278 bp overlap
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 389 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 619 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 619 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 143 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 619 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 537 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 565 bp overlap
ChIP hESC GSE18292.NANOG.hESC 235 bp overlap
ChIP hESC GSE20650.NANOG.hESC 242 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 77 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 329 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 185 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 450 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 440 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 229 bp overlap
NRL 1 dataset
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Nr2f6 1 dataset
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
PKNOX2 1 dataset
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP GM23338 ENCFF333SNB 261 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 619 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 348 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 619 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 209 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 256 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 174 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 189 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
PPARD 1 dataset
Motif ES_0h ES_0h-PPARD_MA1550.2 14 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RARB 1 dataset
Motif ES_0h ES_0h-RARB_MA1552.2 13 bp overlap
RBPJ 2 datasets
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RXRB 1 dataset
Motif ES_0h ES_0h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif ES_0h ES_0h-RXRG_MA0856.1 14 bp overlap
Rfx6 1 dataset
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 313 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 168 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 112 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 521 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 503 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 243 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 249 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 183 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 370 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 619 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 619 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 596 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 619 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 619 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 619 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 619 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 157 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 311 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 241 bp overlap
TBP 1 dataset
Motif ES_0h ES_0h-TBP_MA0108.3 7 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 151 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 619 bp overlap
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
ChIP H1 ENCFF778PAX 176 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 185 bp overlap
TFAP2A 2 datasets
Motif ES_0h ES_0h-TFAP2A_MA0003.5 9 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 201 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 3 datasets
Motif ES_0h ES_0h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 591 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 367 bp overlap
TFAP2E 1 dataset
Motif ES_0h ES_0h-TFAP2E_MA1569.2 9 bp overlap
TGIF1 1 dataset
Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
THAP1 1 dataset
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 418 bp overlap
USF1 2 datasets
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 124 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 199 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 266 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ZEB1 2 datasets
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP42 1 dataset
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZNF16 2 datasets
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
ChIP WTC11 ENCFF352POG 327 bp overlap
ChIP WTC11 ENCFF352POG 497 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 458 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 115 bp overlap
ChIP H9 GSE133630.ZNF398.H9 154 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 619 bp overlap
ZNF528 2 datasets
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif ES_0h ES_0h-ZNF558_MA2335.1 29 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 190 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap