chr5 : 141,494,729 141,495,611
882 bp 89 TFs 2 linked genes
This 882 bp open chromatin element is linked to PCDHGC5 and PCDHGC4 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
PCDHGC5 5.6 kb Proximal Proximity
PCDHGC4 9.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:141,489,729 – 141,500,611
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 4 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 241 bp overlap
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 216 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 221 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 310 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 205 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 400 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 872 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 188 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 350 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 882 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 616 bp overlap
BRD4 16 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 405 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 245 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 360 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 214 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 140 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 528 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 556 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 172 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 385 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 262 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 466 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 325 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 582 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 596 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 463 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 171 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP MOLM-14_IBET GSE65138.CDK8.MOLM-14_IBET 78 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 263 bp overlap
ChIP 501-mel GSE134848.CHD4.501-mel 179 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 276 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 304 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 154 bp overlap
CTCF 6 datasets
ChIP chondrocyte ENCFF134ORZ 581 bp overlap
ChIP chondrocyte ENCFF134ORZ 556 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 246 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 232 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 239 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 404 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 338 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 669 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 445 bp overlap
ERG 2 datasets
ChIP SEM GSE117864.ERG.SEM 687 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 195 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 208 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 392 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 250 bp overlap
ETS1 5 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 383 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 348 bp overlap
ChIP K-562 ENCSR000BKQ.ETS1.K-562 148 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 427 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 191 bp overlap
EZH2 4 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 299 bp overlap
ChIP H1 ENCFF232NZA 259 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 357 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 273 bp overlap
FLI1 7 datasets
ChIP A-673 GSE99959.FLI1.A-673 266 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 231 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 258 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 236 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 281 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 441 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 203 bp overlap
GATA1 4 datasets
ChIP K-562 GSE107726.GATA1.K-562 127 bp overlap
ChIP K-562 ENCSR000EWM.GATA1.K-562 122 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 101 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 147 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 178 bp overlap
ChIP K562 ENCFF513FTZ 204 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 95 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 387 bp overlap
ChIP SH-SY5Y ENCFF485YIB 208 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 145 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 124 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 245 bp overlap
GATA3 7 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 199 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 125 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 83 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 183 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 124 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 127 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 147 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 190 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 171 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 270 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 113 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 455 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 769 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 213 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR893WSB.HDAC2.K-562 141 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 94 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 202 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 214 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 226 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 183 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 714 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 620 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 262 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 882 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 302 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 465 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 350 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 698 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 882 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 474 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 137 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 248 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 224 bp overlap
KLF9 2 datasets
ChIP GBM1A GSE62211.KLF9.GBM1A 102 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 166 bp overlap
KMT2A 3 datasets
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 275 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 56 bp overlap
ChIP L826 GSE83671.KMT2A.L826 331 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 175 bp overlap
MAX 1 dataset
ChIP melanocyte GSE115845.MAX.melanocyte 245 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 600 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 383 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MRTFA 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFA.A-673-clone-Asp114 314 bp overlap
MTA2 2 datasets
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 193 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 228 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 173 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 716 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 383 bp overlap
NCOA3 1 dataset
ChIP MCF-7 ENCSR686SOV.NCOA3.MCF-7 103 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 299 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 184 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 230 bp overlap
POLR2A 3 datasets
ChIP SK-N-MC ENCFF088IVG 491 bp overlap
ChIP neural cell ENCFF604SPB 315 bp overlap
ChIP vagina ENCFF384GAB 631 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 94 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 252 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 475 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 568 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 393 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 207 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 443 bp overlap
RAD21 2 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 255 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 215 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 339 bp overlap
RBPJ 4 datasets
ChIP GIC GSE79734.RBPJ.GIC 158 bp overlap
ChIP GIC GSE79734.RBPJ.GIC 203 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 653 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 631 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 140 bp overlap
REST 3 datasets
ChIP hippocampus GSE144226.REST.hippocampus 243 bp overlap
ChIP neural cell ENCFF882LXX 149 bp overlap
ChIP neural cell ENCFF882LXX 367 bp overlap
RNF2 3 datasets
ChIP WA09 GSE105028.RNF2.WA09 208 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 323 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 194 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 205 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 257 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 119 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 669 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 578 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 579 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 534 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 396 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 493 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE36578.SMAD3.BG03 84 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 59 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 151 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 139 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 882 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 194 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 306 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 459 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 260 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 297 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 106 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 106 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 106 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 169 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 305 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 180 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 238 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 105 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 209 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 800 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 851 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 797 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 406 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 553 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 326 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 274 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 243 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 236 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 385 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 266 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 252 bp overlap