chr5 : 51,381,588 51,382,293
705 bp 89 TFs 2 linked genes
This 705 bp open chromatin element is linked to ISL1-DT and ISL1 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ISL1-DT 1.0 kb Proximal Proximity
ISL1 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,376,588 – 51,387,293
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 146 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 573 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 280 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 277 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 186 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 178 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 370 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 144 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 394 bp overlap
CDK9 2 datasets
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 344 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 226 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 436 bp overlap
DUX4 3 datasets
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 554 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 547 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 516 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 540 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 243 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF451CNG 385 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 220 bp overlap
ERF::FOXI1 3 datasets
Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_48h DE_48h-ERFFOXI1_MA1935.2 10 bp overlap
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 360 bp overlap
EZH2 18 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 153 bp overlap
ChIP GM23248 ENCFF404ZHM 530 bp overlap
ChIP GM23248 ENCFF404ZHM 561 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 670 bp overlap
ChIP GM23338 ENCFF613YON 558 bp overlap
ChIP GM23338 ENCFF886DXX 357 bp overlap
ChIP H1 ENCFF232NZA 705 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 237 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 460 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 203 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 546 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 705 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 391 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 370 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap
ChIP neural progenitor cell ENCFF018MKA 683 bp overlap
ChIP neural progenitor cell ENCFF472NFV 705 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 135 bp overlap
ChIP DE DE-FOXA2-1 293 bp overlap
ChIP DE DE-FOXA2-2 584 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 280 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 511 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 231 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 158 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 430 bp overlap
GATA3 4 datasets
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 326 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 255 bp overlap
ChIP SK-N-SH ENCFF040SSB 213 bp overlap
GATA4 12 datasets
ChIP DE DE-GATA4-1 705 bp overlap
ChIP DE DE-GATA4-2 705 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 341 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 341 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 257 bp overlap
ChIP foregut GSE117136.GATA4.foregut 616 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 542 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 388 bp overlap
GATA5 4 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 16 datasets
ChIP DE DE-GATA6-1 505 bp overlap
ChIP DE DE-GATA6-2 705 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 705 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 665 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 599 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 705 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 705 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 675 bp overlap
ChIP foregut GSE117136.GATA6.foregut 567 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 569 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 260 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 525 bp overlap
Gata3 4 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 195 bp overlap
HOXD12::ELK1 4 datasets
Motif DE_36h DE_36h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_48h DE_48h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_60h DE_60h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_72h DE_72h-HOXD12ELK1_MA1958.2 13 bp overlap
Hnf1A 3 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IRF1 3 datasets
ChIP AsPC-1 GSE141606.IRF1.AsPC-1 271 bp overlap
ChIP AsPC-1_IFNg GSE141606.IRF1.AsPC-1_IFNg 311 bp overlap
ChIP AsPC-1_ZBED2-cDNA GSE141606.IRF1.AsPC-1_ZBED2-cDNA 220 bp overlap
IRF3 3 datasets
Motif DE_36h DE_36h-IRF3_MA1418.2 17 bp overlap
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
IRF4 3 datasets
Motif DE_36h DE_36h-IRF4_MA1419.2 14 bp overlap
Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap
Motif DE_60h DE_60h-IRF4_MA1419.2 14 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 318 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 438 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 258 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 284 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_C-term_shCtrl_TASP1-KO 398 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 332 bp overlap
Lef1 3 datasets
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MAX 1 dataset
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 218 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 236 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 205 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 222 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 233 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 432 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 393 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 561 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 420 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 72 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFYB 3 datasets
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NR1D2 2 datasets
Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
NR2C1 2 datasets
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 2 datasets
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 277 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PITX3 2 datasets
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 357 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 78 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 286 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 90 bp overlap
Prdm15 4 datasets
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
Motif DE_72h DE_72h-Prdm15_MA1616.2 11 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 304 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 298 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 165 bp overlap
RNF2 6 datasets
ChIP H1 ENCFF239FFS 486 bp overlap
ChIP H1 ENCFF239FFS 228 bp overlap
ChIP H1 ENCFF239FFS 182 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 244 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 283 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 705 bp overlap
Rfx6 3 datasets
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
Rhox11 4 datasets
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
Motif DE_48h DE_48h-Rhox11_MA0629.2 9 bp overlap
Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap
Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 122 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 224 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 51 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 661 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 611 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 399 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 540 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 543 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 366 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 168 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 342 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 537 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 63 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 224 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 292 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 531 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 415 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 374 bp overlap
ChIP H1 ENCFF881NFR 705 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 454 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 264 bp overlap
TAF1 2 datasets
ChIP SK-N-SH ENCFF630ERV 297 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 446 bp overlap
TCF12 3 datasets
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
ChIP SK-N-SH ENCFF147AHB 364 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 332 bp overlap
TCF7 3 datasets
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 188 bp overlap
TRPS1 4 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 290 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 332 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 306 bp overlap
ZKSCAN2 1 dataset
ChIP HEK293T GSE78099.ZKSCAN2.HEK293T 383 bp overlap
ZNF184 3 datasets
Motif DE_36h DE_36h-ZNF184_MA2120.1 13 bp overlap
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF354A 3 datasets
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 2 datasets
ChIP HEK293T ENCFF019DZX 337 bp overlap
ChIP HEK293T ENCSR882ICT.ZNF384.HEK293T 322 bp overlap
ZNF449 3 datasets
Motif DE_36h DE_36h-ZNF449_MA1656.2 10 bp overlap
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
ZNF558 4 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF652 4 datasets
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF677 4 datasets
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
Motif DE_48h DE_48h-ZNF677_MA2101.1 12 bp overlap
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
Motif DE_72h DE_72h-ZNF677_MA2101.1 12 bp overlap
ZNF695 1 dataset
ChIP HEK293T GSE78099.ZNF695.HEK293T 138 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 147 bp overlap