chr4 : 6,225,496 – 6,225,856
360 bp 89 TFs 1 linked gene
This 360 bp open chromatin element is linked to ENSG00000290803 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000290803 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:6,220,496 – 6,230,856
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 360 bp overlap
AR 1 dataset
ChIP A-375 GSE116189.AR.A-375 169 bp overlap
ARID2 4 datasets
ChIP Aska-SS GSE108025.ARID2.Aska-SS 162 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 174 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 218 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 240 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 277 bp overlap
BORCS8,MEF2B 1 dataset
ChIP HepG2 ENCFF255VGS 340 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 161 bp overlap
CDK7 2 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 119 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 163 bp overlap
CHAMP1 1 dataset
ChIP K-562 ENCSR065XVO.CHAMP1.K-562 111 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 106 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 122 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 202 bp overlap
EHMT2 5 datasets
ChIP A-549 ENCSR321BJQ.EHMT2.A-549 360 bp overlap
ChIP HepG2 ENCFF004KYI 360 bp overlap
ChIP HepG2 ENCFF004KYI 255 bp overlap
ChIP K-562 ENCSR175EOM.EHMT2.K-562 360 bp overlap
ChIP K562 ENCFF053BWO 192 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 193 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 155 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 193 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 276 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 218 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 360 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 205 bp overlap
FOXP4 2 datasets
ChIP WTC11 ENCFF708TAF 285 bp overlap
ChIP WTC11 ENCFF708TAF 242 bp overlap
GATA2 1 dataset
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 141 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 287 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 241 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 347 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 192 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 223 bp overlap
JUN 3 datasets
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 135 bp overlap
ChIP WTC11 ENCFF172UDA 273 bp overlap
ChIP WTC11 ENCFF172UDA 229 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 170 bp overlap
MED1 2 datasets
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 142 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 154 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MIER1 2 datasets
ChIP K-562 ENCSR426MDV.MIER1.K-562 352 bp overlap
ChIP K562 ENCFF584AYC 127 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 232 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 136 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 178 bp overlap
NFAT5 1 dataset
ChIP Hep-G2 ENCSR565BVI.NFAT5.Hep-G2 163 bp overlap
NFYC 1 dataset
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 156 bp overlap
ONECUT1 1 dataset
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 140 bp overlap
ONECUT2 1 dataset
ChIP Hep-G2 ENCSR661PKJ.ONECUT2.Hep-G2 125 bp overlap
PKNOX1 1 dataset
Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 213 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 249 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 360 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 134 bp overlap
PRDM10 1 dataset
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 163 bp overlap
PRDM15 1 dataset
ChIP Hep-G2 ENCSR011INW.PRDM15.Hep-G2 161 bp overlap
RCOR1 2 datasets
ChIP Hep-G2 ENCSR000EDQ.RCOR1.Hep-G2 194 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 143 bp overlap
REST 71 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 360 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 360 bp overlap
ChIP A549 ENCFF148AIS 317 bp overlap
ChIP A549 ENCFF148AIS 360 bp overlap
ChIP CD4 GSE49570.REST.CD4 360 bp overlap
ChIP GM12878 ENCFF235NGC 259 bp overlap
ChIP GM12878 ENCFF943QPB 254 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 360 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 360 bp overlap
ChIP GM23338 ENCFF024TCL 191 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 360 bp overlap
ChIP GP5D GSE51234.REST.GP5D 360 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 360 bp overlap
ChIP H1 ENCFF203SWY 360 bp overlap
ChIP H1 ENCFF429RUE 249 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 360 bp overlap
ChIP HCT116 ENCFF929AYY 226 bp overlap
ChIP HEK293 ENCFF073DOT 289 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 360 bp overlap
ChIP HL-60 ENCFF589LOF 276 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 360 bp overlap
ChIP HeLa-S3 ENCFF911DTC 193 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 360 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 360 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 360 bp overlap
ChIP HepG2 ENCFF122AWR 231 bp overlap
ChIP HepG2 ENCFF800JSL 219 bp overlap
ChIP Ishikawa ENCFF456OHV 360 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 360 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 360 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 360 bp overlap
ChIP K-562 GSE70482.REST.K-562 360 bp overlap
ChIP K562 ENCFF430APM 200 bp overlap
ChIP K562 ENCFF685YZN 318 bp overlap
ChIP K562 ENCFF688UKW 359 bp overlap
ChIP K562 ENCFF758CZL 360 bp overlap
ChIP MCF-7 ENCFF893RRD 288 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 360 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 360 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 360 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 360 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 360 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 360 bp overlap
ChIP PFSK-1 ENCFF668WMP 124 bp overlap
ChIP PFSK-1 ENCFF845VHA 240 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 360 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 360 bp overlap
ChIP Panc1 ENCFF338WSQ 192 bp overlap
ChIP Panc1 ENCFF518EEQ 273 bp overlap
ChIP Panc1 ENCFF629OJO 192 bp overlap
ChIP SK-N-SH ENCFF635KBN 183 bp overlap
ChIP SK-N-SH ENCFF861MKH 183 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 360 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 360 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 360 bp overlap
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 232 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 360 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 360 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 360 bp overlap
ChIP hepatocyte ERP000395.REST.hepatocyte 75 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 328 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 277 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 247 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 256 bp overlap
ChIP liver ENCFF240FWT 248 bp overlap
ChIP liver ENCFF577AZT 306 bp overlap
ChIP liver ENCSR893QWP.REST.liver 360 bp overlap
ChIP liver ENCSR867WPH.REST.liver 360 bp overlap
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.REST.metastatic-neuroblastoma_CHLA90 360 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.REST.metastatic-neuroblastoma_SKNMM 267 bp overlap
ChIP neural ENCSR000BTV.REST.neural 157 bp overlap
RFXAP 1 dataset
ChIP Hep-G2 ENCSR524RLU.RFXAP.Hep-G2 153 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 323 bp overlap
ChIP H1 ENCFF896IJG 231 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 170 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 159 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 331 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 307 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 246 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 299 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 149 bp overlap
SMAD4 1 dataset
ChIP WTC11 ENCFF195KVB 256 bp overlap
SMARCA4 17 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 254 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 240 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 200 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 147 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 143 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 151 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.SMARCA4.MCF-7_ARID1A-KO 311 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT 169 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_4-OHT_clone14 240 bp overlap
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 262 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 205 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 227 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 188 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 130 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 176 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 251 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 177 bp overlap
SMARCB1 6 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 164 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 304 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 283 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 123 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 207 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 177 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 202 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 145 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 182 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 230 bp overlap
SMARCD3 2 datasets
ChIP MCF-7 GSE124225.SMARCD3.MCF-7 169 bp overlap
ChIP MCF-7_KO GSE124225.SMARCD3.MCF-7_KO 151 bp overlap
SMARCE1 1 dataset
ChIP MCF-7 ENCSR431TLD.SMARCE1.MCF-7 150 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 177 bp overlap
SP140L 1 dataset
ChIP Hep-G2 ENCSR107DKT.SP140L.Hep-G2 144 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 358 bp overlap
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 94 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 221 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 89 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 291 bp overlap
TARDBP 1 dataset
ChIP K-562 ENCSR429XTR.TARDBP.K-562 191 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 287 bp overlap
TEAD4 4 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 190 bp overlap
ChIP A549 ENCFF243FTL 156 bp overlap
ChIP WTC11 ENCFF114TZS 239 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 266 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 217 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 172 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 111 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 268 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 246 bp overlap
WIZ 1 dataset
ChIP HepG2 ENCFF559CYZ 360 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 109 bp overlap
ZBTB21 1 dataset
ChIP Hep-G2 ENCSR549PAU.ZBTB21.Hep-G2 118 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 190 bp overlap
ZBTB7B 1 dataset
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 161 bp overlap
ZFP37 1 dataset
ChIP Hep-G2 ENCSR505LJT.ZFP37.Hep-G2 155 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN1 4 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 189 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 250 bp overlap
ChIP K562 ENCFF977CBA 331 bp overlap
ZKSCAN8 1 dataset
ChIP WTC11 ENCFF666HNJ 299 bp overlap
ZNF142 1 dataset
ChIP Hep-G2 ENCSR512ECF.ZNF142.Hep-G2 191 bp overlap
ZNF143 3 datasets
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 251 bp overlap
ChIP Hep-G2 ENCSR101FJT.ZNF143.Hep-G2 128 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 167 bp overlap
ZNF16 1 dataset
Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap
ZNF232 1 dataset
ChIP Hep-G2 ENCSR837GLU.ZNF232.Hep-G2 160 bp overlap
ZNF24 1 dataset
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
ZNF263 1 dataset
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 147 bp overlap
ZNF276 1 dataset
ChIP Hep-G2 ENCSR076KLJ.ZNF276.Hep-G2 111 bp overlap
ZNF503 1 dataset
ChIP Hep-G2 ENCSR998YJI.ZNF503.Hep-G2 157 bp overlap
ZNF697 2 datasets
ChIP Hep-G2 ENCSR734WFB.ZNF697.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF153LJW 258 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap
ZNF766 1 dataset
ChIP Hep-G2 ENCSR869RSW.ZNF766.Hep-G2 163 bp overlap
ZNF883 1 dataset
ChIP Hep-G2 ENCSR882YYL.ZNF883.Hep-G2 167 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
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