chr3 : 115,624,333 115,624,706
373 bp 97 TFs 1 linked gene
This 373 bp open chromatin element is linked to GAP43 and is bound by 97 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
GAP43 824 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:115,619,333 – 115,629,706
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 127 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 283 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 217 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 262 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 110 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 171 bp overlap
BRD4 4 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 373 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 207 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 373 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 290 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 257 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 76 bp overlap
CLOCK 1 dataset
ChIP BA10_2 GSE96659.CLOCK.BA10_2 123 bp overlap
CTCF 2 datasets
ChIP brain ENCFF685VRG 254 bp overlap
ChIP neural cell ENCFF335ADI 63 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 276 bp overlap
ERF::SREBF2 2 datasets
Motif DE_12h DE_12h-ERFSREBF2_MA1939.2 16 bp overlap
Motif ES_0h ES_0h-ERFSREBF2_MA1939.2 16 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 193 bp overlap
EZH2 7 datasets
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 120 bp overlap
ChIP fibroblast of lung ENCFF479BAW 359 bp overlap
ChIP fibroblast of lung ENCFF479BAW 373 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 324 bp overlap
ChIP keratinocyte ENCFF070STK 289 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 260 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 227 bp overlap
FOSL2 3 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 256 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 181 bp overlap
ChIP SK-N-SH ENCFF127ZDW 258 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA1 1 dataset
Motif ES_0h ES_0h-GATA1_MA0035.5 7 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 212 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 191 bp overlap
Gfi1B 1 dataset
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 166 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 373 bp overlap
IKZF2 1 dataset
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 356 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 284 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 267 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 235 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 284 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 165 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF12 2 datasets
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
Motif ES_0h ES_0h-KLF12_MA0742.2 9 bp overlap
KLF13 3 datasets
Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap
Motif DE_24h DE_24h-KLF13_MA0657.2 17 bp overlap
Motif ES_0h ES_0h-KLF13_MA0657.2 17 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Motif ES_0h ES_0h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 208 bp overlap
KLF6 2 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
KLF7 2 datasets
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
Motif ES_0h ES_0h-KLF7_MA1959.2 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 205 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 210 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 368 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 107 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 70 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 373 bp overlap
MYC 3 datasets
ChIP NB69 GSE138295.MYC.NB69 237 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 70 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 50 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 299 bp overlap
MZF1 1 dataset
Motif ES_0h ES_0h-MZF1_MA0056.3 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 360 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 172 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 311 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 296 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 328 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Prdm15 2 datasets
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Motif ES_0h ES_0h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP neural cell ENCFF564MOT 300 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 191 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 86 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REL 1 dataset
Motif ES_0h ES_0h-REL_MA0101.1 10 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 327 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 200 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 353 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 337 bp overlap
ChIP H1 ENCFF896IJG 202 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 360 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 203 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 200 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 105 bp overlap
SP3 2 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif ES_0h ES_0h-SP3_MA0746.3 11 bp overlap
SP4 2 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif ES_0h ES_0h-SP8_MA0747.2 11 bp overlap
SP9 2 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif ES_0h ES_0h-SP9_MA1564.2 10 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 247 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TAF1 2 datasets
ChIP neural ENCSR000BTX.TAF1.neural 373 bp overlap
ChIP neural cell ENCFF468SPD 367 bp overlap
TAL1::TCF3 2 datasets
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 121 bp overlap
TCF7L1 1 dataset
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 203 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 203 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 74 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 270 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF16 1 dataset
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 209 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap