chr1 : 62,059,014 62,059,394
380 bp 130 TFs 0 linked genes
This 380 bp open chromatin element has no linked target genes and is bound by 130 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:62,054,014 – 62,064,394
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
130 transcription factors
Source
Cell type
ATF2 2 datasets
ChIP H1 ENCFF295GZO 380 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 238 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCL11A 2 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 117 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 366 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBFB 1 dataset
ChIP WTC11 ENCFF113HIY 380 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 301 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 106 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 380 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
CTNNB1 3 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 361 bp overlap
ChIP hESC_activinA_15h GSE99202.CTNNB1.hESC_activinA_15h 367 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 119 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 96 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EGR1 1 dataset
ChIP WA01 ENCSR000BJA.EGR1.WA01 138 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 152 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 117 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELF4 1 dataset
Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 279 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 195 bp overlap
ETS1 3 datasets
ChIP GM23338 ENCFF701IZH 337 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 173 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 202 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV6 2 datasets
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ChIP WTC11 ENCFF812SCD 361 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 272 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 208 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 212 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 309 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 260 bp overlap
ChIP DE DE-GATA4-2 288 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 269 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 308 bp overlap
ChIP DE DE-GATA6-2 380 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 380 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 380 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 380 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 380 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 285 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 248 bp overlap
HNF4A 1 dataset
ChIP HCT-116 GSE62890.HNF4A.HCT-116 209 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Isl1 1 dataset
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
JMJD1C 1 dataset
ChIP THP-1 GSE63484.JMJD1C.THP-1 167 bp overlap
JUN 9 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 380 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 294 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 380 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 380 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 309 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 376 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 380 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 380 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF468JZD 231 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 145 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE79899.KMT2A.THP-1 79 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 291 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 265 bp overlap
MYC 1 dataset
ChIP DLD-1_MYC-activated GSE117240.MYC.DLD-1_MYC-activated 164 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 192 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 380 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 357 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 231 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 380 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 380 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 380 bp overlap
ChIP hESC GSE18292.NANOG.hESC 178 bp overlap
ChIP hESC GSE20650.NANOG.hESC 173 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 280 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 324 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 372 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 311 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 380 bp overlap
ChIP H1 ENCFF833NJP 318 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 148 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 376 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 343 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 193 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 154 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 323 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 237 bp overlap
PRDM14 1 dataset
ChIP hESC GSE22767.PRDM14.hESC 378 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
REST 1 dataset
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 132 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RXRA 1 dataset
ChIP WA01 ENCSR000BJW.RXRA.WA01 137 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 344 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 132 bp overlap
SMAD2 3 datasets
ChIP hESC GSE29422.SMAD2.hESC 250 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 380 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 380 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 380 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 380 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 380 bp overlap
SMAD2_3 7 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 380 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 380 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 380 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 380 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 380 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 270 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 380 bp overlap
SMAD3 5 datasets
ChIP BG03 GSE21614.SMAD3.BG03 214 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 344 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 222 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 224 bp overlap
ChIP hESC_DIFF_D2 GSE75297.SMAD3.hESC_DIFF_D2 170 bp overlap
SMAD4 3 datasets
ChIP WTC11 ENCFF195KVB 332 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 174 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 226 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 125 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 177 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 296 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 341 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 325 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 348 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 380 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 278 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 365 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SOX2 3 datasets
ChIP hESC GSE18292.SOX2.hESC 135 bp overlap
ChIP hESC GSE69479.SOX2.hESC 185 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 277 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 156 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 140 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 269 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 220 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 214 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 293 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 336 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 5 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 172 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 330 bp overlap
ChIP H1 ENCFF778PAX 88 bp overlap
ChIP WTC11 ENCFF114TZS 270 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 233 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 258 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 352 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 250 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 123 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 295 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 188 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 127 bp overlap
ZNF143 2 datasets
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 166 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 201 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 238 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 347 bp overlap
ZNF547 1 dataset
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap