chr3 : 5,218,979 5,219,544
565 bp 105 TFs 0 linked genes
This 565 bp open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:5,213,979 – 5,224,544
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
AR 3 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 132 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 159 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 85 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 174 bp overlap
BRD4 1 dataset
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 454 bp overlap
CEBPA 9 datasets
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 173 bp overlap
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 268 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 203 bp overlap
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 161 bp overlap
ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 150 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 119 bp overlap
ChIP THP-1_EtOH_2h GSE124032.CEBPA.THP-1_EtOH_2h 107 bp overlap
ChIP liver ERP002306.CEBPA.liver 150 bp overlap
CEBPB 16 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 151 bp overlap
ChIP A549 ENCFF781RLJ 232 bp overlap
Motif ES_0h ES_0h-CEBPB_MA0466.4 10 bp overlap
ChIP H1 ENCFF871PTR 111 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 123 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 110 bp overlap
ChIP HepG2 ENCFF536NTI 187 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 172 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 173 bp overlap
ChIP K562 ENCFF189VBN 217 bp overlap
ChIP K562 ENCFF194QGF 218 bp overlap
ChIP K562 ENCFF584CTB 359 bp overlap
ChIP K562 ENCFF584CTB 525 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 169 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 189 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 131 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CEBPE 1 dataset
Motif ES_0h ES_0h-CEBPE_MA0837.3 10 bp overlap
CEBPG 4 datasets
Motif ES_0h ES_0h-CEBPG_MA0838.1 10 bp overlap
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
ChIP K-562 ENCSR620VIC.CEBPG.K-562 220 bp overlap
ChIP K562 ENCFF783ADE 353 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 272 bp overlap
ChIP BLaER1 ENCFF274GAT 540 bp overlap
DDX5 1 dataset
ChIP BT-549 GSE112961.DDX5.BT-549 75 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
EBF1 1 dataset
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
EWSR1-FLI1 2 datasets
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Ebf2 1 dataset
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXC1 1 dataset
Motif ES_0h ES_0h-FOXC1_MA0032.2 11 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 129 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 152 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 132 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 163 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 163 bp overlap
HOXA4 1 dataset
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
IKZF1 4 datasets
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 234 bp overlap
JDP2 1 dataset
Motif ES_0h ES_0h-JDP2_MA0655.1 9 bp overlap
MAF 1 dataset
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 378 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 550 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 274 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 244 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 271 bp overlap
ChIP hESC GSE18292.NANOG.hESC 282 bp overlap
NFE2 1 dataset
Motif ES_0h ES_0h-NFE2_MA0841.2 10 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NKX6-1 1 dataset
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
NR1I2 1 dataset
Motif ES_0h ES_0h-NR1I2_MA1533.2 15 bp overlap
NR2C2 1 dataset
Motif ES_0h ES_0h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA1538.1 15 bp overlap
NR2F6 1 dataset
Motif ES_0h ES_0h-NR2F6_MA1539.1 15 bp overlap
Nfat5 1 dataset
Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 1 dataset
Motif ES_0h ES_0h-Nfatc2_MA0152.3 8 bp overlap
PBX1 1 dataset
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
POLR2A 1 dataset
ChIP GM12878 ENCFF263VRI 428 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 423 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA1549.2 7 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RBPJ 2 datasets
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RELA 2 datasets
ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 114 bp overlap
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 163 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 113 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 117 bp overlap
Rarg 1 dataset
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
Runx1 2 datasets
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SIX1 1 dataset
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif ES_0h ES_0h-SIX2_MA1119.2 11 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 343 bp overlap
SNAI2 1 dataset
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SP1 1 dataset
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT1 1 dataset
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Spi1 2 datasets
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 234 bp overlap
TEAD1 1 dataset
Motif ES_0h ES_0h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif ES_0h ES_0h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif ES_0h ES_0h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif ES_0h ES_0h-TEAD4_MA0809.3 8 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 1 dataset
Motif ES_0h ES_0h-TFAP2C_MA0815.1 13 bp overlap
THAP1 2 datasets
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 125 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 143 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 264 bp overlap
ZBTB26 1 dataset
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZEB1 1 dataset
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZNF135 1 dataset
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF184 1 dataset
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF24 1 dataset
Motif ES_0h ES_0h-ZNF24_MA1124.1 13 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
Zfp809 1 dataset
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap