chr2 : 176,158,221 – 176,158,594
373 bp 94 TFs 1 linked gene
This 373 bp open chromatin element is linked to HOXD4 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HOXD4 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:176,153,221 – 176,163,594
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 259 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 82 bp overlap
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 360 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 286 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 373 bp overlap
BRD1 2 datasets
ChIP HUES-64 GSE104059.BRD1.HUES-64 373 bp overlap
ChIP RKO GSE47190.BRD1.RKO 157 bp overlap
BRD4 10 datasets
ChIP BE2C GSE80151.BRD4.BE2C 130 bp overlap
ChIP BE2C GSE80151.BRD4.BE2C 183 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 373 bp overlap
ChIP HEK293T GSE51633.BRD4.HEK293T 252 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 154 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 130 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 183 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 373 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 219 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 110 bp overlap
CBX2 4 datasets
ChIP HEK293T GSE34774.CBX2.HEK293T 373 bp overlap
ChIP HepG2 ENCFF216GIL 350 bp overlap
ChIP HepG2 ENCFF838BNI 373 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 373 bp overlap
CBX8 3 datasets
ChIP H1 ENCFF095JHA 227 bp overlap
ChIP H1 ENCFF095JHA 369 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 373 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 73 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 373 bp overlap
CTCF 3 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 306 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 335 bp overlap
ChIP HEK293 ENCSR617IFZ.CTCF.HEK293 272 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 263 bp overlap
ChIP BLaER1 ENCFF460KDD 363 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 257 bp overlap
EZH2 19 datasets
ChIP GM23338 ENCFF613YON 373 bp overlap
ChIP GM23338 ENCFF886DXX 62 bp overlap
ChIP GM23338 ENCFF886DXX 329 bp overlap
ChIP H1 ENCFF232NZA 373 bp overlap
ChIP HepG2 ENCFF912EIW 146 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 373 bp overlap
ChIP astrocyte ENCFF365JTP 209 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 373 bp overlap
ChIP hepatocyte ENCFF118DKH 255 bp overlap
ChIP hepatocyte ENCFF552DZB 373 bp overlap
ChIP keratinocyte ENCFF070STK 284 bp overlap
ChIP keratinocyte ENCFF070STK 373 bp overlap
ChIP keratinocyte ENCFF070STK 296 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 266 bp overlap
ChIP myotube ENCFF857GWB 297 bp overlap
ChIP neural cell ENCFF610EPB 362 bp overlap
ChIP neural progenitor cell ENCFF018MKA 373 bp overlap
ChIP neural progenitor cell ENCFF472NFV 373 bp overlap
ChIP neural progenitor cell ENCFF472NFV 373 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 232 bp overlap
GATA6 3 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 301 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 108 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 129 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 87 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 256 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 187 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 183 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 206 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 373 bp overlap
KDM4C 1 dataset
ChIP SW1783 GSE92483.KDM4C.SW1783 166 bp overlap
KDM5B 2 datasets
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 200 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 143 bp overlap
KMT2A 6 datasets
ChIP HEK293T_C-term GSE90762.KMT2A.HEK293T_C-term 220 bp overlap
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 131 bp overlap
ChIP HEK293T_C-term_C49 GSE90762.KMT2A.HEK293T_C-term_C49 353 bp overlap
ChIP HEK293T_C-term_shCtrl GSE90762.KMT2A.HEK293T_C-term_shCtrl 224 bp overlap
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 342 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 373 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 226 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 118 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 145 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 160 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 252 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 140 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 223 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 163 bp overlap
MYCN 9 datasets
ChIP BE2C GSE80151.MYCN.BE2C 88 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 101 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 154 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 373 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 179 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 322 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 74 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 88 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 56 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 269 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCFF875BDB 70 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 196 bp overlap
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 197 bp overlap
PCGF1 1 dataset
ChIP HEK293T_PCGF135fl GSE119618.PCGF1.HEK293T_PCGF135fl 51 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 373 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 373 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 173 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 107 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 261 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 303 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 163 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 373 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 94 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 373 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 371 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PRDM4 1 dataset
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 373 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 108 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 356 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 110 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 301 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 373 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 284 bp overlap
RBM39 1 dataset
ChIP HepG2 ENCFF084YZE 373 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 373 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 373 bp overlap
ChIP Hep-G2 ENCSR523XCR.RNF2.Hep-G2 369 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 351 bp overlap
SIN3A 2 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 105 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 114 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 114 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 332 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 135 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 110 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 360 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 368 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 251 bp overlap
SMARCC1 2 datasets
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 332 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 132 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 298 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 125 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 159 bp overlap
SUPT5H 1 dataset
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 225 bp overlap
SUZ12 16 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 370 bp overlap
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 101 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 373 bp overlap
ChIP H1 ENCFF507HGF 206 bp overlap
ChIP H1 ENCFF881NFR 373 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 373 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 93 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 199 bp overlap
ChIP K562 ENCFF397TBJ 373 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 77 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 193 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 339 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 291 bp overlap
ChIP NT2/D1 ENCFF574SXS 373 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 373 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 373 bp overlap
TAF1 2 datasets
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 191 bp overlap
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 214 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 355 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 109 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 373 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 224 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 140 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 206 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 129 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 199 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 329 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752POA 373 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 300 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 229 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 244 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 305 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 337 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 373 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 234 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 288 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 153 bp overlap
ChIP HEK293 ENCFF784SLD 217 bp overlap
ZNF341 4 datasets
ChIP HEK293 ENCFF944VMC 66 bp overlap
ChIP HEK293 ENCFF944VMC 362 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 373 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 180 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 204 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 142 bp overlap
ChIP HEK293 ENCFF799ATK 373 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 373 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 103 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 137 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 230 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 170 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 192 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 373 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 373 bp overlap
ZNF692 1 dataset
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 373 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 114 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 242 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 231 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 178 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 233 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 158 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 373 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCFF835SGA 350 bp overlap
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