chr1 : 41,395,334 41,395,535
201 bp 86 TFs 0 linked genes
This 201 bp open chromatin element has no linked target genes and is bound by 86 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:41,390,334 – 41,400,535
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 201 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 187 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 201 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 201 bp overlap
BRD4 12 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 201 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 109 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 130 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 201 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 201 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 201 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 201 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 182 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 201 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 129 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 201 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 155 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 193 bp overlap
CHD4 1 dataset
ChIP RH5 GSE155861.CHD4.RH5 55 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 131 bp overlap
ChIP H1 ENCFF955PMP 187 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 121 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 201 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 201 bp overlap
CTCF 9 datasets
ChIP A673 ENCFF123WOM 74 bp overlap
ChIP HFFc6 ENCFF005CJI 71 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 201 bp overlap
ChIP brain ENCFF163BBN 107 bp overlap
ChIP brain ENCFF163BBN 201 bp overlap
ChIP chondrocyte ENCFF134ORZ 195 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 118 bp overlap
ChIP esophagus squamous epithelium ENCFF797YPG 59 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 177 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 144 bp overlap
EP300 4 datasets
ChIP AML GSE131939.EP300.AML 64 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 201 bp overlap
ChIP neural cell ENCFF442QNK 201 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 68 bp overlap
ESR1 4 datasets
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 201 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 119 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 113 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 139 bp overlap
EZH2 3 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 201 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 201 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 158 bp overlap
FOSL1 1 dataset
ChIP H1 ENCFF920RFC 143 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 182 bp overlap
ChIP WTC11 ENCFF338WGC 116 bp overlap
FOXP2 1 dataset
ChIP SK-N-MC ENCFF865YOS 155 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 56 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 129 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 57 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 201 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 184 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 201 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 201 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 201 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 201 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 87 bp overlap
KDM5B 2 datasets
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 96 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 95 bp overlap
KLF17 2 datasets
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 103 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 201 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 128 bp overlap
MAZ 2 datasets
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 84 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 107 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 119 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 201 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF542NWJ 146 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 191 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 199 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 196 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 121 bp overlap
Mecom 1 dataset
Motif ES_0h ES_0h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 201 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 201 bp overlap
NRF1 4 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 158 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 144 bp overlap
ChIP K562 ENCFF689EWI 142 bp overlap
ChIP K562 ENCFF791UHF 136 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 201 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 201 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 201 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 175 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 201 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 201 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 100 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 141 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 201 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 201 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 140 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 201 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 201 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 183 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 94 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 201 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 80 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 159 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 116 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 170 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 189 bp overlap
REST 12 datasets
ChIP GM23338 ENCFF024TCL 200 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 154 bp overlap
ChIP H1 ENCFF429RUE 201 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 187 bp overlap
ChIP Ishikawa ENCFF456OHV 154 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 201 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 201 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 199 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 160 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 194 bp overlap
ChIP neural ENCSR000BTV.REST.neural 171 bp overlap
RUNX1 1 dataset
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 127 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 176 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 201 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 201 bp overlap
ChIP H1 ENCFF896IJG 192 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 201 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 192 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 201 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 107 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 201 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 201 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 199 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 201 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 201 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 186 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 172 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 201 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 118 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 201 bp overlap
SOX2 4 datasets
ChIP HNSC GSE69479.SOX2.HNSC 169 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 201 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 201 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 201 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 201 bp overlap
ChIP WTC11 ENCFF688PEU 201 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 149 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 124 bp overlap
TARDBP 1 dataset
ChIP K-562 GSE120104.TARDBP.K-562 169 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 148 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 201 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 76 bp overlap
TP53 1 dataset
ChIP WTC11 ENCFF359JCU 201 bp overlap
TP63 2 datasets
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 174 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 194 bp overlap
XRCC5 1 dataset
ChIP K-562 GSE120104.XRCC5.K-562 118 bp overlap
YY1 1 dataset
ChIP H1 ENCFF524BTL 201 bp overlap
ZBED4 1 dataset
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB2 2 datasets
ChIP GM12878 GSE97661.ZBTB2.GM12878 93 bp overlap
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 84 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 189 bp overlap
ZNF263 1 dataset
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 201 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 201 bp overlap
ZNF410 1 dataset
ChIP K-562 GSE97661.ZNF410.K-562 66 bp overlap
ZNF460 1 dataset
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF707 1 dataset
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 201 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 201 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 201 bp overlap