chr2 : 64,145,247 – 64,146,245
998 bp 90 TFs 1 linked gene
This 998 bp open chromatin element is linked to PELI1 and is bound by 90 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PELI1 851 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:64,140,247 – 64,151,245
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 267 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 383 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 376 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 279 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 196 bp overlap
BRD4 1 dataset
ChIP keratinocyte GSE140992.BRD4.keratinocyte 139 bp overlap
CBX2 1 dataset
ChIP HepG2 ENCFF838BNI 252 bp overlap
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 178 bp overlap
ChIP HepG2 ENCFF175DFS 305 bp overlap
CEBPB 10 datasets
ChIP HeLa-S3 ENCFF722WEG 68 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP Ishikawa ENCFF010USJ 116 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 55 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 305 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 132 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP K562 ENCFF584CTB 500 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 138 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 89 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 134 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 468 bp overlap
CTCF 1 dataset
ChIP upper lobe of left lung ENCFF374MAK 411 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 313 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 226 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 143 bp overlap
ESR1 14 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 152 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 131 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 129 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 260 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 236 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 267 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 286 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 186 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 156 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 257 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 272 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 210 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 293 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 239 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 224 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 99 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 215 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 221 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 193 bp overlap
ChIP DE DE-FOXA2-1 771 bp overlap
ChIP DE DE-FOXA2-2 728 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 222 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 105 bp overlap
FOXO1 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE68349.FOXO1.B-cell_GERMINAL_CENTER 322 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 481 bp overlap
GATA2 3 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 271 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 344 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 162 bp overlap
GATA3 4 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 303 bp overlap
ChIP Jurkat GSE120063.GATA3.Jurkat 227 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 205 bp overlap
ChIP thymocyte GSE71751.GATA3.thymocyte 217 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 642 bp overlap
ChIP DE DE-GATA4-2 755 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 453 bp overlap
ChIP DE DE-GATA6-2 713 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 377 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 725 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 637 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 861 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 641 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 581 bp overlap
GRHL2 4 datasets
ChIP HBE GSE46194.GRHL2.HBE 165 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 220 bp overlap
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 164 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 158 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 187 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 236 bp overlap
ChIP K562 ENCFF348IBL 425 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 185 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 153 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 350 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 185 bp overlap
MEF2B 1 dataset
ChIP tonsil GSE110682.MEF2B.tonsil 461 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 192 bp overlap
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 125 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 193 bp overlap
Mafb 1 dataset
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 238 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 229 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 115 bp overlap
NR3C1 3 datasets
ChIP HCC1937 GSE152203.NR3C1.HCC1937 158 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 161 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 250 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 306 bp overlap
RAD21 1 dataset
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 163 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 238 bp overlap
RREB1 1 dataset
Motif DE_24h DE_24h-RREB1_MA0073.2 19 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 173 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 630 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 443 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 896 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 767 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 439 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 512 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 546 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 467 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 333 bp overlap
SMARCA4 1 dataset
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 268 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 289 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 561 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 357 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 418 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 258 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 2 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 203 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 303 bp overlap
STAT3 19 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 325 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 286 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 313 bp overlap
ChIP HeLa-S3 ENCFF655DGU 337 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 174 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 325 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 310 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 311 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 302 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 318 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 216 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 417 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 517 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 494 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 553 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 592 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 563 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 586 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 591 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TAL1 2 datasets
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 209 bp overlap
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 185 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 254 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 143 bp overlap
TEAD4 5 datasets
ChIP Ishikawa ENCFF772OTG 211 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 171 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 195 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 290 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 313 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 159 bp overlap
YEATS4 1 dataset
ChIP HepG2 ENCFF340OIC 248 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 123 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 427 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 351 bp overlap
ZBTB1 2 datasets
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 196 bp overlap
ChIP Jurkat_ZBTB1-KO_cDNA GSE145783.ZBTB1.Jurkat_ZBTB1-KO_cDNA 174 bp overlap
ZKSCAN5 1 dataset
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF140 1 dataset
Motif DE_24h DE_24h-ZNF140_MA1589.2 19 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif DE_24h DE_24h-ZNF143_MA0088.2 16 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 223 bp overlap
Huangfu Lab · Publications · Resources · Contact