chr20 : 48,931,717 48,932,241
524 bp 96 TFs 1 linked gene
This 524 bp open chromatin element is linked to ARFGEF2 and is bound by 96 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ARFGEF2 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:48,926,717 – 48,937,241
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
AHDC1 1 dataset
ChIP HepG2 ENCFF069FSH 342 bp overlap
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 475 bp overlap
ChIP K562 ENCFF938UXQ 189 bp overlap
ARNTL 2 datasets
ChIP HepG2 ENCFF217GCH 327 bp overlap
ChIP U2OS GSE44236.ARNTL.U2OS 156 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 501 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 200 bp overlap
CBFA2T2 3 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 254 bp overlap
ChIP K562 ENCFF963TXY 381 bp overlap
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 94 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 386 bp overlap
ChIP K562 ENCFF673OEZ 235 bp overlap
CCAR2 2 datasets
ChIP Hep-G2 ENCSR247XFV.CCAR2.Hep-G2 212 bp overlap
ChIP Hep-G2 GSE120104.CCAR2.Hep-G2 156 bp overlap
CCDC6 1 dataset
ChIP HepG2 ENCFF751JSA 524 bp overlap
CDKN1B 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.CDKN1B.MDA-BoM-1833_shp27 378 bp overlap
CTCF 1 dataset
ChIP U-937 ERP008568.CTCF.U-937 190 bp overlap
DPF2 2 datasets
ChIP K562 ENCFF775HUO 253 bp overlap
ChIP K562 ENCFF775HUO 196 bp overlap
E2F4 1 dataset
ChIP K-562 ENCSR000EWL.E2F4.K-562 204 bp overlap
E4F1 2 datasets
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 296 bp overlap
ChIP MCF-7 ENCSR841YWU.E4F1.MCF-7 270 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 238 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 279 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 249 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 106 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 522 bp overlap
ChIP DE DE-FOXA2-2 515 bp overlap
FOXK2 1 dataset
ChIP GM12878 ENCSR861JUQ.FOXK2.GM12878 408 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 183 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 145 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000EWG.GATA2.K-562 116 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 524 bp overlap
ChIP DE DE-GATA4-2 524 bp overlap
ChIP foregut GSE117136.GATA4.foregut 408 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 524 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 423 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 468 bp overlap
ChIP foregut GSE117136.GATA6.foregut 434 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 121 bp overlap
GTF2I 1 dataset
ChIP K562 ENCFF539BYI 216 bp overlap
HDAC1 2 datasets
ChIP HepG2 ENCFF304IEJ 61 bp overlap
ChIP K-562 ENCSR711VWL.HDAC1.K-562 204 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 524 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 272 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 259 bp overlap
HNRNPLL 1 dataset
ChIP K562 ENCFF541ZGX 119 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 112 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF771OHZ 83 bp overlap
IKZF5 1 dataset
ChIP HepG2 ENCFF641EBK 159 bp overlap
KDM1A 6 datasets
ChIP HepG2 ENCFF240UWG 213 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 340 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 132 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 171 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 142 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 138 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 112 bp overlap
MAX 1 dataset
ChIP HepG2 ENCFF102SKR 61 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 120 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 301 bp overlap
ChIP RH4 GSE83726.MED1.RH4 403 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 309 bp overlap
MLLT1 1 dataset
ChIP K-562 ENCSR107GRP.MLLT1.K-562 431 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 252 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 123 bp overlap
NCOR1 1 dataset
ChIP K-562 ENCSR798ILC.NCOR1.K-562 205 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCFF925CGH 385 bp overlap
NONO 1 dataset
ChIP HepG2 ENCFF361UQH 222 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 180 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 235 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 429 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF262YXJ 492 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 149 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 75 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 70 bp overlap
PTBP1 1 dataset
ChIP K-562 GSE120104.PTBP1.K-562 131 bp overlap
RARG 2 datasets
ChIP HepG2 ENCFF989AQH 524 bp overlap
ChIP HepG2 ENCFF989AQH 357 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 146 bp overlap
RBM25 2 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 178 bp overlap
ChIP K562 ENCFF248CGR 186 bp overlap
SIX5 1 dataset
ChIP K562 ENCFF472MWE 251 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 137 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 524 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 177 bp overlap
SMAD7 1 dataset
ChIP HepG2 ENCFF850FXR 171 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 234 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 212 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 448 bp overlap
ChIP K562 ENCFF936KHY 282 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 267 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 90 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 289 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 524 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 105 bp overlap
TAL1 6 datasets
ChIP K-562 GSE107726.TAL1.K-562 166 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 147 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 167 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 155 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 149 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TCF12 2 datasets
ChIP K-562 ENCSR189TRZ.TCF12.K-562 244 bp overlap
ChIP K-562 ENCSR744WOO.TCF12.K-562 191 bp overlap
XRCC5 1 dataset
ChIP K-562 ENCSR506KWJ.XRCC5.K-562 146 bp overlap
ZBTB34 1 dataset
ChIP HepG2 ENCFF161MIO 474 bp overlap
ZBTB4 1 dataset
ChIP HepG2 ENCFF828GZH 215 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 393 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 217 bp overlap
ZFP91 2 datasets
ChIP HepG2 ENCFF012CME 371 bp overlap
ChIP HepG2 ENCFF012CME 139 bp overlap
ZFX 3 datasets
ChIP HCT116 ENCFF324IZY 377 bp overlap
ChIP HCT116 ENCFF324IZY 168 bp overlap
ChIP HepG2 ENCFF016NZF 139 bp overlap
ZFY 1 dataset
ChIP HepG2 ENCFF106ELT 223 bp overlap
ZMYM3 7 datasets
ChIP Hep-G2 ENCSR848YWD.ZMYM3.Hep-G2 152 bp overlap
ChIP Hep-G2_AC_JH39-2-2B9 GSE97661.ZMYM3.Hep-G2_AC_JH39-2-2B9 143 bp overlap
ChIP Hep-G2_Ab_JH39-2-2F10 GSE97661.ZMYM3.Hep-G2_Ab_JH39-2-2F10 105 bp overlap
ChIP HepG2 ENCFF408KTI 252 bp overlap
ChIP HepG2 ENCFF667RVD 225 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 138 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 135 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZNF224 1 dataset
ChIP HepG2 ENCFF298FFZ 127 bp overlap
ZNF251 1 dataset
ChIP HepG2 ENCFF506XOB 391 bp overlap
ZNF282 1 dataset
ChIP HepG2 ENCFF189NHY 317 bp overlap
ZNF343 1 dataset
ChIP HepG2 ENCFF003KCM 524 bp overlap
ZNF350 1 dataset
ChIP HepG2 ENCFF595LWL 231 bp overlap
ZNF485 1 dataset
ChIP HepG2 ENCFF360UPH 220 bp overlap
ZNF543 1 dataset
ChIP HepG2 ENCFF864SAR 58 bp overlap
ZNF609 1 dataset
ChIP HepG2 ENCFF900FRP 452 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 227 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 266 bp overlap