chr2 : 3,559,440 – 3,559,598
158 bp 83 TFs 3 linked genes
This 158 bp open chromatin element is linked to RNASEH1-DT, ENSG00000286905, and RNASEH1 and is bound by 83 transcription factors.
Linked Genes
3 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RNASEH1-DT 973 bp At TSS Proximity
ENSG00000286905 1.1 kb Proximal Proximity
RNASEH1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:3,554,440 – 3,564,598
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 158 bp overlap
ChIP K562 ENCFF492SKF 158 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 137 bp overlap
ARNT 1 dataset
ChIP K-562 ENCSR155KHM.ARNT.K-562 53 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 92 bp overlap
ATF2 1 dataset
ChIP H1 ENCFF295GZO 146 bp overlap
ATF4 1 dataset
ChIP K-562 ENCSR145TSJ.ATF4.K-562 106 bp overlap
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 158 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 127 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 79 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 158 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 54 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD2.K-562_DMSO-IFNG 129 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 158 bp overlap
BRD4 8 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 158 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 158 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 158 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 158 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 52 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 145 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 118 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 158 bp overlap
CDK9 1 dataset
ChIP P493-6 GSE36354.CDK9.P493-6 133 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 158 bp overlap
CSRNP1 1 dataset
ChIP HepG2 ENCFF191UYG 158 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 139 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 158 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 103 bp overlap
EHMT2 1 dataset
ChIP HepG2 ENCFF004KYI 138 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF242HCG 110 bp overlap
ESR1 9 datasets
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 109 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 136 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 158 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 136 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 158 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 135 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 134 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 134 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 158 bp overlap
FIP1L1 1 dataset
ChIP Hep-G2 ENCSR313VZG.FIP1L1.Hep-G2 92 bp overlap
FOXA1 15 datasets
ChIP MCF-7 GSE140185.FOXA1.MCF-7 153 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 158 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 158 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 158 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 153 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 158 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 144 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 158 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 132 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 113 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 158 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 158 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 113 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 72 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 134 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 158 bp overlap
ChIP DE DE-FOXA2-2 158 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 158 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 114 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 151 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 112 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 83 bp overlap
GATA2 1 dataset
ChIP K-562 ENCSR000EWG.GATA2.K-562 150 bp overlap
GATA3 9 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 115 bp overlap
ChIP MCF-7 GSE117492.GATA3.MCF-7 104 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 130 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 132 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 128 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 158 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 158 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 129 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 158 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 158 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 157 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 158 bp overlap
ChIP foregut GSE117136.GATA4.foregut 158 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 150 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 158 bp overlap
ChIP DE DE-GATA6-2 158 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 124 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 117 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 158 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 158 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 74 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 158 bp overlap
HSF1 1 dataset
ChIP GM12878 ENCSR009MBP.HSF1.GM12878 69 bp overlap
IRF2 1 dataset
ChIP K-562 ENCSR376WCJ.IRF2.K-562 113 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF934ZRG 71 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 131 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 158 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 158 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 158 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 158 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 149 bp overlap
MED1 1 dataset
ChIP P493-6 GSE36354.MED1.P493-6 105 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 131 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 153 bp overlap
MYC 3 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 57 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 106 bp overlap
ChIP U2OS_SHRCTR GSE77356.MYC.U2OS_SHRCTR 71 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 158 bp overlap
NFATC3 1 dataset
ChIP K-562 ENCSR670FDA.NFATC3.K-562 158 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 119 bp overlap
NR3C1 2 datasets
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 132 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 110 bp overlap
NR3C1_mut 1 dataset
ChIP MCF-7_ICI_Dex GSE81510.NR3C1_mut.MCF-7_ICI_Dex 103 bp overlap
NRF1 6 datasets
ChIP K-562 ENCSR494TDU.NRF1.K-562 158 bp overlap
ChIP K-562 ENCSR998AJK.NRF1.K-562 158 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 137 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 154 bp overlap
ChIP K562 ENCFF130SGK 158 bp overlap
ChIP K562 ENCFF689EWI 158 bp overlap
PAX5 5 datasets
ChIP DOHH2 GSE69558.PAX5.DOHH2 151 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 158 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 158 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 91 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 126 bp overlap
PGR 2 datasets
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 129 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 125 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 158 bp overlap
POU2F2 1 dataset
ChIP GM12878 ENCFF207RKY 97 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 158 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 158 bp overlap
RELA 2 datasets
ChIP HeLa-B2_DMSO GSE24518.RELA.HeLa-B2_DMSO 158 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 149 bp overlap
SIN3A 1 dataset
ChIP K-562 ENCSR920BLG.SIN3A.K-562 115 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 141 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 89 bp overlap
SMARCA4 3 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 158 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 158 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 87 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 158 bp overlap
SRSF1 1 dataset
ChIP HepG2 ENCFF509LHO 158 bp overlap
STAT3 2 datasets
ChIP OCI-Ly10 GSE106844.STAT3.OCI-Ly10 85 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
SUPT5H 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 158 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 158 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 158 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 97 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 137 bp overlap
TRIM28 1 dataset
ChIP K-562 ENCSR474CVP.TRIM28.K-562 158 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 138 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 158 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 158 bp overlap
ZBTB40 1 dataset
ChIP GM12878 ENCSR189YYK.ZBTB40.GM12878 68 bp overlap
ZEB2 3 datasets
ChIP K-562 ENCSR004GKA.ZEB2.K-562 158 bp overlap
ChIP K-562 ENCSR322CFO.ZEB2.K-562 156 bp overlap
ChIP K562 ENCFF795CMH 158 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 123 bp overlap
ZHX1 1 dataset
ChIP K-562 ENCSR557RVF.ZHX1.K-562 149 bp overlap
ZKSCAN5 1 dataset
ChIP HEK293T GSE78099.ZKSCAN5.HEK293T 126 bp overlap
ZNF138 1 dataset
ChIP HepG2 ENCFF770NCL 55 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR695EQB.ZNF24.K-562 90 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 51 bp overlap
ZNF619 1 dataset
ChIP HepG2 ENCFF388NNO 55 bp overlap
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