chr17 : 57,099,741 57,100,357
616 bp 119 TFs 7 linked genes
This 616 bp open chromatin element is linked to 7 target genes and is bound by 119 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
AKAP1 14.8 kb Distal Multiome
SCPEP1 121.9 kb Distal Multiome
COIL 139.0 kb Distal Multiome
MSI2 156.5 kb Distal Multiome
TRIM25 186.0 kb Distal Multiome
DGKE 265.9 kb Distal Multiome
C17orf67 266.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:57,094,741 – 57,105,357
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
119 transcription factors
Source
Cell type
AKAP8 1 dataset
ChIP HepG2 ENCFF478OVI 452 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 153 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 231 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 77 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 252 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 183 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 54 bp overlap
EN2 1 dataset
Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ESR1 1 dataset
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 277 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FERD3L 1 dataset
Motif ES_0h ES_0h-FERD3L_MA1485.1 14 bp overlap
FIGLA 1 dataset
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 271 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 267 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 191 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 213 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 207 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 207 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 160 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 130 bp overlap
GATA3 1 dataset
ChIP T-47D GSE51274.GATA3.T-47D 218 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 448 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 374 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 487 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 355 bp overlap
GBX1 1 dataset
Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 360 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 509 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 81 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 108 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 107 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
LBX1 1 dataset
Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap
Lhx1 1 dataset
Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 328 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MNX1 1 dataset
ChIP HepG2 ENCFF938KYA 474 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 398 bp overlap
NKX2-4 1 dataset
Motif ES_0h ES_0h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif ES_0h ES_0h-NKX2-8_MA0673.2 8 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
OSR2 5 datasets
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
ChIP HEK293 ENCFF875BDB 200 bp overlap
ChIP HEK293 ENCFF875BDB 146 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 291 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 227 bp overlap
PATZ1 4 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCFF016MNJ 407 bp overlap
ChIP HEK293 ENCFF016MNJ 199 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 240 bp overlap
POLR2A 1 dataset
ChIP MCF-7 ENCFF411WCU 164 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 206 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 270 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 367 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 417 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 362 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 329 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 241 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 283 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 172 bp overlap
PRRX2 1 dataset
Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap
RARA 1 dataset
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 356 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 341 bp overlap
ChIP K562 ENCFF421AVO 289 bp overlap
ChIP K562 ENCFF809XVG 225 bp overlap
ChIP K562 ENCFF809XVG 152 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 227 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 209 bp overlap
SMAD1 1 dataset
ChIP Hep-G2 ENCSR213QOZ.SMAD1.Hep-G2 241 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 375 bp overlap
SMAD2-3 3 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 604 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 427 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 264 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 460 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 363 bp overlap
SNAI3 1 dataset
Motif ES_0h ES_0h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 144 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 81 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 161 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 227 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 268 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 151 bp overlap
TCF7L2 1 dataset
ChIP HEK293 ENCFF513JQN 423 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 350 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 108 bp overlap
WT1 3 datasets
ChIP HEK293 ENCFF906HIR 243 bp overlap
ChIP HEK293 ENCFF906HIR 123 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 316 bp overlap
YY1 2 datasets
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 107 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 160 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZBTB24 1 dataset
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 279 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 156 bp overlap
ZEB1 2 datasets
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 143 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 148 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 58 bp overlap
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 149 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 155 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 144 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
ZNF843 1 dataset
ChIP HEK293 ENCFF241QRH 263 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 126 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 107 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 133 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap