chr1 : 245,256,440 245,257,386
946 bp 99 TFs 0 linked genes
This 946 bp open chromatin element has no linked target genes and is bound by 99 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:245,251,440 – 245,262,386
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 71 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 327 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 186 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 222 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 153 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 148 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 230 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 209 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 215 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ELF1 1 dataset
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
EPAS1 1 dataset
Motif DE_12h DE_12h-EPAS1_MA2325.1 9 bp overlap
ESR1 59 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 193 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 158 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 154 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 140 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 114 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 113 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 111 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 94 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 72 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 71 bp overlap
ChIP MCF-7-Luc_E2 GSE78284.ESR1.MCF-7-Luc_E2 79 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 204 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 212 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 189 bp overlap
ChIP MCF-7_E2 GSE81510.ESR1.MCF-7_E2 136 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 128 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 102 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 77 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 90 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 84 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 93 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 101 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 202 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 122 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 111 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 115 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 127 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 129 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 58 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 162 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 150 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 85 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 120 bp overlap
ChIP MCF-7_SHCTR_E2 GSE60270.ESR1.MCF-7_SHCTR_E2 92 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 69 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 142 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 144 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 108 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 182 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 194 bp overlap
ChIP MCF-7_estradiol-progesterone_4h GSE99626.ESR1.MCF-7_estradiol-progesterone_4h 122 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 215 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 121 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 112 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 83 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 119 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 84 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 96 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 113 bp overlap
ChIP MCF-7_shCtrl_TamR GSE128445.ESR1.MCF-7_shCtrl_TamR 119 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 154 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 150 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 167 bp overlap
ChIP MDA-MB-134-VI_FI GSE109103.ESR1.MDA-MB-134-VI_FI 168 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 192 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 157 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 189 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 127 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 181 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 178 bp overlap
ESR1_Y537S 2 datasets
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 110 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 157 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 410 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA1 7 datasets
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 124 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 152 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 125 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 116 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 114 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 93 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 526 bp overlap
ChIP DE DE-FOXA2-2 523 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 158 bp overlap
FOXD2 1 dataset
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 123 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 650 bp overlap
ChIP DE DE-GATA4-2 697 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 596 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 324 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 554 bp overlap
ChIP DE DE-GATA6-2 945 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 731 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 721 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 710 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 620 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 724 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 694 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 298 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HES7 1 dataset
Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 317 bp overlap
ChIP MCF-7_TamR_BD610326 GSE128445.JUN.MCF-7_TamR_BD610326 170 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 300 bp overlap
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 132 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 189 bp overlap
LIN54 1 dataset
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 137 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 451 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 660 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 313 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 277 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 81 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 349 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 460 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 215 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 64 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 209 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 120 bp overlap
POU5F1 9 datasets
ChIP BG03 GSE21614.POU5F1.BG03 221 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 658 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 534 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 512 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 153 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 442 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 542 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 170 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 686 bp overlap
Prdm15 1 dataset
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 206 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 177 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 451 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 231 bp overlap
SIN3A 6 datasets
ChIP H1 ENCFF042ZSL 260 bp overlap
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 259 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 206 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 219 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 404 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 212 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 409 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 335 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 387 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 303 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 338 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 168 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 415 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 259 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 237 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 264 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 285 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 306 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 459 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 309 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 417 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 160 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 93 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 146 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 249 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 103 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 5 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 253 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 495 bp overlap
ChIP H1 ENCFF778PAX 210 bp overlap
ChIP WTC11 ENCFF114TZS 341 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 349 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 210 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 189 bp overlap
ChIP NT2/D1 ENCFF999MII 325 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 244 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 224 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 249 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap