chr17 : 29,930,801 29,930,957
156 bp 86 TFs 2 linked genes
This 156 bp open chromatin element is linked to SSH2 and EFCAB5 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SSH2 525 bp At TSS Proximity
EFCAB5 899 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:29,925,801 – 29,935,957
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 130 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 156 bp overlap
ARID1A 3 datasets
ChIP MCF-7 GSE123284.ARID1A.MCF-7 52 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 156 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 80 bp overlap
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 72 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 116 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 112 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 150 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 156 bp overlap
BRD3 1 dataset
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 125 bp overlap
BRD4 6 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 82 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 116 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 145 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 156 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 135 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 67 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 71 bp overlap
ChIP K562 ENCFF584CTB 104 bp overlap
CHD4 1 dataset
ChIP A-549 ENCSR550SCU.CHD4.A-549 156 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 156 bp overlap
CREBBP 1 dataset
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 156 bp overlap
CTCF 9 datasets
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 156 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 156 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 152 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 156 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 63 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 52 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 156 bp overlap
ChIP neuron GSE115407.CTCF.neuron 138 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 53 bp overlap
E2F1 2 datasets
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 156 bp overlap
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 139 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 106 bp overlap
ELF1 2 datasets
ChIP K562 ENCFF886KFV 156 bp overlap
ChIP K562 ENCFF886KFV 156 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 88 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE95302.ESR1.MCF-7 107 bp overlap
ChIP MCF-7_E2-640min-ERalpha GSE94023.ESR1.MCF-7_E2-640min-ERalpha 124 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 102 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 77 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 124 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 94 bp overlap
ETS1 2 datasets
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 156 bp overlap
ChIP THP-6_shEts1 GSE138516.ETS1.THP-6_shEts1 156 bp overlap
EZH2 1 dataset
ChIP Jurkat_KO GSE147198.EZH2.Jurkat_KO 156 bp overlap
FOXA1 27 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 156 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 156 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 97 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 156 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 123 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 64 bp overlap
ChIP 22Rv1_TFS_Crispr-36 GSE123618.FOXA1.22Rv1_TFS_Crispr-36 62 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 76 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 62 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 155 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 58 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 74 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 156 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 79 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 84 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 129 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 121 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 117 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 148 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 73 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 66 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 156 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 80 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 156 bp overlap
ChIP breast-cancer_Veh-131 GSE128018.FOXA1.breast-cancer_Veh-131 156 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 156 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 156 bp overlap
FOXA2 6 datasets
ChIP DE DE-FOXA2-1 156 bp overlap
ChIP DE DE-FOXA2-2 156 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 96 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 79 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 60 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 117 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 53 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 65 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 81 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 58 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 109 bp overlap
HDAC1 2 datasets
ChIP HepG2 ENCFF750ZWM 115 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 56 bp overlap
HDAC2 3 datasets
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 156 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 71 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 156 bp overlap
HOXB13 7 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 156 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 59 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 156 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 112 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 79 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 156 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 156 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 156 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 156 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 100 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 156 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 115 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 115 bp overlap
KMT2A 2 datasets
ChIP MOLM-13 GSE114981.KMT2A.MOLM-13 128 bp overlap
ChIP MOLM-13_CBS79-KO-VP-HOTTIP GSE114981.KMT2A.MOLM-13_CBS79-KO-VP-HOTTIP 156 bp overlap
KMT2B 1 dataset
ChIP HepG2 ENCFF675TEK 124 bp overlap
LDB1 1 dataset
ChIP HEP GSE52637.LDB1.HEP 108 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 55 bp overlap
MED1 4 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 156 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 80 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 78 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 156 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 156 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 100 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 132 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 118 bp overlap
NKRF 1 dataset
ChIP K562 ENCFF815TQL 87 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 156 bp overlap
NR2F1 1 dataset
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 151 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 156 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 156 bp overlap
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 156 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 156 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 156 bp overlap
PML 2 datasets
ChIP GM12878 ENCFF160JQZ 156 bp overlap
ChIP GM12878 ENCFF160JQZ 72 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 156 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 156 bp overlap
RAD21 4 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 97 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 62 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 156 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 62 bp overlap
REST 1 dataset
ChIP K562 ENCFF688UKW 84 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 152 bp overlap
SIN3A 1 dataset
ChIP A-549 ENCSR000BRM.SIN3A.A-549 107 bp overlap
SMARCA4 8 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 60 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 121 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 58 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 112 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 156 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 156 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 53 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 99 bp overlap
SMARCB1 3 datasets
ChIP MCF-7 GSE123284.SMARCB1.MCF-7 75 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 128 bp overlap
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 156 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 156 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 156 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 137 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 156 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 98 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 156 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 156 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 156 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 73 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 139 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 151 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 156 bp overlap
YY1 1 dataset
ChIP ALL GSE145549.YY1.ALL 156 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCFF007OSW 81 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 156 bp overlap
ChIP K562 ENCFF521DSV 156 bp overlap
ZBTB7A 4 datasets
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 156 bp overlap
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 152 bp overlap
ChIP K-562 GSE103445.ZBTB7A.K-562 156 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 101 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 62 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 156 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 74 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 132 bp overlap
ZIC2 1 dataset
ChIP HCT-116_WT GSE127960.ZIC2.HCT-116_WT 156 bp overlap
ZIC5 4 datasets
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 156 bp overlap
ChIP HCT-116_WT-FL290 GSE127960.ZIC5.HCT-116_WT-FL290 116 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 156 bp overlap
ChIP HCT-116_sc2 GSE127960.ZIC5.HCT-116_sc2 156 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 156 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 73 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 156 bp overlap