chr1 : 241,302,005 – 241,302,517

512 bp 112 TFs 0 linked genes

This 512 bp open chromatin element has no linked target genes and is bound by 112 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

112 transcription factors

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 512 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 358 bp overlap

ATF2 2 datasets

Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 229 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 190 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 148 bp overlap

BRF1 1 dataset

ChIP H9 GSE94418.BRF1.H9 152 bp overlap

CREB1 1 dataset

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Dmrt1 2 datasets

Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap

Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 154 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ELK1::HOXA1 1 dataset

Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 297 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 178 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

ERF::NHLH1 1 dataset

Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

ETV5::DRGX 1 dataset

Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap

ETV5::FOXO1 2 datasets

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap

ETV6 1 dataset

Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap

ETV7 1 dataset

Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

EZH2 1 dataset

ChIP THP-1 GSE135024.EZH2.THP-1 211 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FLI1::DRGX 1 dataset

Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap

GLI3 1 dataset

Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

GTF2I 1 dataset

ChIP WTC11 ENCFF255XXZ 295 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 283 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 178 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

JUN 1 dataset

Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap

JUND 1 dataset

Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap

KDM1A 1 dataset

ChIP H1 ENCFF696SGD 421 bp overlap

KLF17 2 datasets

Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap

Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap

KLF3 1 dataset

Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MAX 1 dataset

ChIP H1 ENCFF914VQY 350 bp overlap

MSANTD3 2 datasets

Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap

Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap

NANOG 6 datasets

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 277 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 187 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 197 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 375 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 236 bp overlap

NFATC4 1 dataset

ChIP WTC11 ENCFF744MZI 271 bp overlap

NKX2-2 2 datasets

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap

NR1D1 1 dataset

Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap

NR1D2 1 dataset

Motif DE_12h DE_12h-NR1D2_MA1532.2 15 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR2F1 1 dataset

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Nr2F6 1 dataset

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

PLAG1 1 dataset

Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 331 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 156 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 257 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

RUNX1 1 dataset

ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 162 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Rarg 1 dataset

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 98 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 240 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 159 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 238 bp overlap

SP5 3 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap

SPIB 1 dataset

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

SPIC 1 dataset

Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap

SREBF1 1 dataset

Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap

Sox11 2 datasets

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 190 bp overlap

TBP 2 datasets

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 209 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 122 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 245 bp overlap

TFAP2A 1 dataset

Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap

TFAP2C 1 dataset

Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Wt1 2 datasets

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap

ZFP42 1 dataset

Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF135 1 dataset

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF136 1 dataset

Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF189 2 datasets

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF263 2 datasets

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap

ZNF341 2 datasets

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap

ZNF354C 1 dataset

Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF708 2 datasets

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

Motif ES_0h ES_0h-ZNF708_MA1730.2 9 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

ZNF768 1 dataset

Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap

ZNF770 1 dataset

Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap

ZNF85 1 dataset

Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zfp809 1 dataset

Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap

Zfx 2 datasets

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap