chr16 : 49,838,622 – 49,839,188
566 bp 82 TFs 4 linked genes
This 566 bp open chromatin element is linked to 4 target genes and is bound by 82 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000275155 8.4 kb Proximal Proximity
ZNF423 17.2 kb Distal Multiome
CNEP1R1 186.3 kb Distal Multiome
HEATR3 227.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:49,833,622 – 49,844,188
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AFF1 2 datasets
ChIP SEM_CX4945 GSE90762.AFF1.SEM_CX4945 498 bp overlap
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 416 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 255 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 61 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 92 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 417 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 255 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 566 bp overlap
BRD4 7 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 233 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 123 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 391 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 429 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 414 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 566 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 52 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 182 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 497 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 1 dataset
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 95 bp overlap
CTCFL 1 dataset
ChIP delta-47 GSE70764.CTCFL.delta-47 322 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 430 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 165 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 248 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 231 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 566 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 408 bp overlap
ChIP K-562 GSE23730.ERG.K-562 345 bp overlap
ChIP SEM GSE117864.ERG.SEM 304 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 94 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 363 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 146 bp overlap
EZH2 16 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 286 bp overlap
ChIP H1 ENCFF232NZA 560 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 88 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 204 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 566 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 456 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 566 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 411 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 244 bp overlap
ChIP keratinocyte ENCFF070STK 97 bp overlap
ChIP keratinocyte ENCFF070STK 310 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 356 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 352 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 272 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 300 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 362 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin-Herceptin-ICI GSE101407.FOXA1.breast-cancer_heregulin-Herceptin-ICI 318 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 248 bp overlap
GABPA 2 datasets
ChIP H1 ENCFF739QFD 199 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 147 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 353 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 206 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 289 bp overlap
HNRNPK 6 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 212 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 200 bp overlap
ChIP HepG2 ENCFF493GNS 511 bp overlap
ChIP HepG2 ENCFF826MXP 505 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 185 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 187 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 189 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 341 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 343 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 302 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 355 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 367 bp overlap
ChIP WTC11 ENCFF581TPB 487 bp overlap
KDM4A 3 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 527 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 266 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 349 bp overlap
KMT2A 1 dataset
ChIP SEM GSE83671.KMT2A.SEM 502 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 137 bp overlap
ChIP WTC11 ENCFF223QFY 120 bp overlap
MAZ 1 dataset
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 350 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 362 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 407 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 189 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 404 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 272 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 236 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 500 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 475 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 418 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 142 bp overlap
PATZ1 1 dataset
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
PCBP1 2 datasets
ChIP K-562 ENCSR052PTN.PCBP1.K-562 200 bp overlap
ChIP K-562 GSE120104.PCBP1.K-562 200 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 566 bp overlap
PHF8 1 dataset
ChIP WA01 ENCSR000ATK.PHF8.WA01 144 bp overlap
PLAG1 2 datasets
ChIP K-562 GSE111469.PLAG1.K-562 84 bp overlap
ChIP K-562 GSE111469.PLAG1.K-562 226 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 566 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 297 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 407 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 566 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 486 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 375 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 240 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 566 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 566 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 239 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 119 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 415 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 384 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 80 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 177 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 389 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 449 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 372 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 386 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 258 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 353 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 325 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 185 bp overlap
SMARCA4 4 datasets
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 188 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 551 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 387 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 304 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 388 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 379 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 274 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 331 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 566 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 370 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 240 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP ME-1 GSE46044.SPI1.ME-1 60 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 566 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 505 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 240 bp overlap
STAT3 2 datasets
ChIP WA01 ERP004237.STAT3.WA01 128 bp overlap
ChIP WA01 ERP004237.STAT3.WA01 189 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 135 bp overlap
TCF3 2 datasets
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 332 bp overlap
ChIP SEM GSE85988.TCF3.SEM 129 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 452 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 55 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 149 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 163 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 374 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 511 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 454 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 175 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 111 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF263 1 dataset
ChIP WTC11 ENCFF893RTM 168 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 216 bp overlap
ZNF649 1 dataset
ChIP HEK293T GSE78099.ZNF649.HEK293T 346 bp overlap
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