chr1 : 239,786,469 – 239,786,915
446 bp 95 TFs 0 linked genes
This 446 bp open chromatin element has no linked target genes and is bound by 95 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:239,781,469 – 239,791,915
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 182 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 303 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 220 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 212 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 199 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 380 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 201 bp overlap
CHD8 1 dataset
ChIP T-47D GSE62428.CHD8.T-47D 199 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CRX 4 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 281 bp overlap
ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 181 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 282 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 396 bp overlap
CTCF 6 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 272 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 247 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 276 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 426 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 446 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 193 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 186 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 429 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 279 bp overlap
ELL2 2 datasets
ChIP HeLa GSE40632.ELL2.HeLa 249 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 154 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 210 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 199 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 196 bp overlap
ESR2 3 datasets
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
Motif DE_24h DE_24h-ESR2_MA0258.2 15 bp overlap
Motif DE_36h DE_36h-ESR2_MA0258.2 15 bp overlap
EZH2 2 datasets
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 291 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 184 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 211 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 320 bp overlap
GATA3 1 dataset
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 99 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 273 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 322 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 171 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 224 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 134 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 445 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 254 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 149 bp overlap
ChIP WTC11 ENCFF223QFY 446 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 322 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 326 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 379 bp overlap
MEIS1 6 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 223 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 326 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 235 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 208 bp overlap
NR2C1 3 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR2F1 9 datasets
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
Motif DE_24h DE_24h-NR2F1_MA1538.1 15 bp overlap
Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
Motif DE_36h DE_36h-NR2F1_MA1538.1 15 bp overlap
NR2F6 3 datasets
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
Motif DE_24h DE_24h-NR2F6_MA1539.1 15 bp overlap
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 281 bp overlap
Nr1H2 3 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 3 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_36h DE_36h-Nr2f6_MA0677.2 13 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 398 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 81 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_24h DE_24h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_36h DE_36h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 176 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 197 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 224 bp overlap
PROX1 3 datasets
Motif DE_12h DE_12h-PROX1_MA0794.1 12 bp overlap
Motif DE_24h DE_24h-PROX1_MA0794.1 12 bp overlap
Motif DE_36h DE_36h-PROX1_MA0794.1 12 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 379 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
RXRA::VDR 3 datasets
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_24h DE_24h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_36h DE_36h-RXRAVDR_MA0074.1 15 bp overlap
RXRB 3 datasets
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
RXRG 3 datasets
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Rarg 3 datasets
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif DE_24h DE_24h-Rarg_MA0860.1 17 bp overlap
Motif DE_36h DE_36h-Rarg_MA0860.1 17 bp overlap
Rxra 3 datasets
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 436 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 255 bp overlap
SOX14 3 datasets
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
Motif DE_24h DE_24h-SOX14_MA1562.2 9 bp overlap
Motif DE_36h DE_36h-SOX14_MA1562.2 9 bp overlap
SOX18 3 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif DE_24h DE_24h-SOX18_MA1563.2 8 bp overlap
Motif DE_36h DE_36h-SOX18_MA1563.2 8 bp overlap
SOX4 3 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_24h DE_24h-SOX4_MA0867.3 8 bp overlap
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SOX8 3 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif DE_24h DE_24h-SOX8_MA0868.3 7 bp overlap
Motif DE_36h DE_36h-SOX8_MA0868.3 7 bp overlap
SOX9 3 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif DE_24h DE_24h-SOX9_MA0077.2 8 bp overlap
Motif DE_36h DE_36h-SOX9_MA0077.2 8 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 229 bp overlap
SRY 3 datasets
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Motif DE_24h DE_24h-SRY_MA0084.2 7 bp overlap
Motif DE_36h DE_36h-SRY_MA0084.2 7 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 138 bp overlap
SUPT5H 1 dataset
ChIP HeLa GSE125534.SUPT5H.HeLa 133 bp overlap
Sox17 3 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif DE_24h DE_24h-Sox17_MA0078.3 10 bp overlap
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox5 3 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif DE_24h DE_24h-Sox5_MA0087.3 8 bp overlap
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Sox7 3 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif DE_24h DE_24h-Sox7_MA2095.1 10 bp overlap
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 284 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 255 bp overlap
TBX1 3 datasets
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX2 3 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX21 3 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 3 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 3 datasets
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TBX5 3 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
TEAD3 3 datasets
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
Motif DE_24h DE_24h-TEAD3_MA0808.1 8 bp overlap
Motif DE_36h DE_36h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
THRA 4 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap
Motif DE_36h DE_36h-THRA_MA1969.2 18 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 186 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 383 bp overlap
ZFP57 4 datasets
Motif DE_12h DE_12h-ZFP57_MA1583.2 7 bp overlap
Motif DE_24h DE_24h-ZFP57_MA1583.2 7 bp overlap
Motif DE_36h DE_36h-ZFP57_MA1583.2 7 bp overlap
ChIP hESC GSE115387.ZFP57.hESC 238 bp overlap
ZIC1 3 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_24h DE_24h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 3 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF143 4 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 217 bp overlap
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 198 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 362 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 162 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 290 bp overlap
ZNF530 3 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif DE_36h DE_36h-ZNF530_MA1981.2 14 bp overlap
ZNF75A 3 datasets
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_24h DE_24h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
ZNF768 3 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_24h DE_24h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Znf423 3 datasets
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap
Motif DE_36h DE_36h-Znf423_MA0116.1 15 bp overlap
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