chr15 : 87,576,925 87,577,264
339 bp 75 TFs 1 linked gene
This 339 bp open chromatin element is linked to LINC00052 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00052 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:87,571,925 – 87,582,264
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 227 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 339 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 139 bp overlap
BCLAF1 2 datasets
ChIP K-562 ENCSR000BKH.BCLAF1.K-562 287 bp overlap
ChIP K562 ENCFF936NCS 263 bp overlap
BRD4 4 datasets
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 99 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 127 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 339 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 339 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 339 bp overlap
CDC5L 1 dataset
ChIP K562 ENCFF644OMA 77 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 146 bp overlap
CHD1 2 datasets
ChIP MCF-7 ENCFF937PTG 339 bp overlap
ChIP MCF-7 ENCSR360JOC.CHD1.MCF-7 339 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 168 bp overlap
CTBP1 1 dataset
ChIP MCF-7 ENCFF969VBY 212 bp overlap
CUX1 2 datasets
ChIP MCF-7 ENCFF779ATB 67 bp overlap
ChIP MCF-7 ENCSR017CEO.CUX1.MCF-7 91 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 316 bp overlap
E2F1 1 dataset
ChIP MDA-MB-231 GSE95303.E2F1.MDA-MB-231 339 bp overlap
ELL2 2 datasets
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 178 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 188 bp overlap
ESR1 4 datasets
ChIP MCF-7 ENCFF004AKH 260 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 339 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 198 bp overlap
ChIP breast_tumor_Male_3 GSE104399.ESR1.breast_tumor_Male_3 339 bp overlap
ESRRA 5 datasets
ChIP MCF-7 ENCFF569SII 171 bp overlap
ChIP MCF-7 ENCSR954WVZ.ESRRA.MCF-7 339 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 210 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 339 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 236 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 237 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 190 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE51274.GATA3.MCF-7 158 bp overlap
GTF2B 3 datasets
ChIP HeLa_ASYNC GSE71848.GTF2B.HeLa_ASYNC 138 bp overlap
ChIP K-562 ENCSR000DOE.GTF2B.K-562 153 bp overlap
ChIP K562 ENCFF716QMI 192 bp overlap
GTF2F1 9 datasets
ChIP H1 ENCFF399TGL 162 bp overlap
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 139 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 136 bp overlap
ChIP K-562 ENCSR000EHC.GTF2F1.K-562 87 bp overlap
ChIP K562 ENCFF290EKB 188 bp overlap
ChIP K562 ENCFF485ALN 185 bp overlap
ChIP MCF-7 ENCFF576OTX 170 bp overlap
ChIP MCF-7 ENCSR557JTZ.GTF2F1.MCF-7 251 bp overlap
ChIP WA01 ENCSR000EBP.GTF2F1.WA01 108 bp overlap
HCFC1 2 datasets
ChIP MCF-7 ENCFF595ZTV 251 bp overlap
ChIP MCF-7 ENCSR697CUP.HCFC1.MCF-7 339 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 130 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 164 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 339 bp overlap
KDM4B 1 dataset
ChIP K-562 ENCSR642VZY.KDM4B.K-562 118 bp overlap
KMT2D 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 216 bp overlap
MAZ 2 datasets
ChIP MCF-7 ENCFF913ACQ 229 bp overlap
ChIP MCF-7 ENCSR288IJC.MAZ.MCF-7 145 bp overlap
MBD2 2 datasets
ChIP MCF-7 ENCFF757JNN 262 bp overlap
ChIP MCF-7 ENCSR940MHE.MBD2.MCF-7 264 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 164 bp overlap
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 161 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO-W505A-MORC2-mut GSE95451.MORC2.HeLa_V5-MORC2-KO-W505A-MORC2-mut 339 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 339 bp overlap
NELFE 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.NELFE.DLD-1_NELFCD-AID 339 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 141 bp overlap
NONO 3 datasets
ChIP K-562 GSE120104.NONO.K-562 111 bp overlap
ChIP K-562 ENCSR415TXN.NONO.K-562 109 bp overlap
ChIP K562 ENCFF782TAA 207 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 264 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 339 bp overlap
NR2F2 1 dataset
ChIP MCF-7 ENCSR000BUY.NR2F2.MCF-7 141 bp overlap
NR3C1 1 dataset
ChIP MCF-7 GSE152203.NR3C1.MCF-7 208 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 144 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 139 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 176 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 210 bp overlap
PML 5 datasets
ChIP K-562 ENCSR000BQY.PML.K-562 327 bp overlap
ChIP K562 ENCFF801LKH 316 bp overlap
ChIP K562 ENCFF801LKH 325 bp overlap
ChIP MCF-7 ENCFF839EHA 332 bp overlap
ChIP MCF-7 ENCSR000BUZ.PML.MCF-7 339 bp overlap
POLR2A 12 datasets
ChIP GM23338 ENCFF450WCS 302 bp overlap
ChIP H1 ENCFF566JSR 295 bp overlap
ChIP H1 ENCFF770YBQ 291 bp overlap
ChIP H1 ENCFF833NJP 197 bp overlap
ChIP HeLa-S3 ENCFF773DNG 326 bp overlap
ChIP K562 ENCFF137JSF 313 bp overlap
ChIP K562 ENCFF215CWW 339 bp overlap
ChIP K562 ENCFF262YXJ 332 bp overlap
ChIP K562 ENCFF514URW 209 bp overlap
ChIP K562 ENCFF757TUO 322 bp overlap
ChIP MCF-7 ENCFF164XWP 141 bp overlap
ChIP MCF-7 ENCFF411WCU 241 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 93 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 77 bp overlap
RAD21 3 datasets
ChIP MCF-7 ENCFF694KOM 313 bp overlap
ChIP MCF-7 ENCFF724VCQ 151 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 201 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 322 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 313 bp overlap
RELA 1 dataset
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 56 bp overlap
SIN3A 4 datasets
ChIP MCF-7 ENCFF521RDC 236 bp overlap
ChIP MCF-7 ENCFF521RDC 148 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 339 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 339 bp overlap
SMAD3 2 datasets
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 114 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 261 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 312 bp overlap
ChIP K562 ENCFF941FJJ 297 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 72 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 144 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 150 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 267 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 185 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 330 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 339 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 339 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 339 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 211 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 288 bp overlap
SNAPC5 1 dataset
ChIP K562 ENCFF999JUU 80 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 69 bp overlap
SREBF1 2 datasets
ChIP MCF-7 ENCFF254QOR 159 bp overlap
ChIP MCF-7 ENCSR197DJH.SREBF1.MCF-7 162 bp overlap
SRF 1 dataset
ChIP MCF-7 ENCFF508RYE 148 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 274 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 339 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 320 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 324 bp overlap
STAT3 1 dataset
ChIP MCF-7 GSE152203.STAT3.MCF-7 282 bp overlap
SUPT5H 4 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 339 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 339 bp overlap
ChIP DLD-1_NELFE-AID_treated GSE144786.SUPT5H.DLD-1_NELFE-AID_treated 339 bp overlap
ChIP K562 ENCFF902PAW 339 bp overlap
TAF1 3 datasets
ChIP K-562 ENCSR000BKS.TAF1.K-562 94 bp overlap
ChIP MCF-7 ENCFF091WNP 209 bp overlap
ChIP MCF-7 ENCSR000AHF.TAF1.MCF-7 137 bp overlap
TAF7 4 datasets
ChIP H1 ENCFF061XZZ 181 bp overlap
ChIP K-562 ENCSR000BNM.TAF7.K-562 308 bp overlap
ChIP K562 ENCFF461SFY 152 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 288 bp overlap
TBP 11 datasets
ChIP H1 ENCFF859IIO 75 bp overlap
ChIP K-562 ENCSR000EHA.TBP.K-562 111 bp overlap
ChIP K-562 GSE55306.TBP.K-562 125 bp overlap
ChIP K562 ENCFF901UYM 95 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 114 bp overlap
ChIP hESC GSE122298.TBP.hESC 99 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 87 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 68 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 58 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 157 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 65 bp overlap
TCF12 1 dataset
ChIP MCF-7 ENCFF329MRX 258 bp overlap
TEAD4 2 datasets
ChIP MCF-7 ENCFF710WPA 126 bp overlap
ChIP MCF-7 ENCSR000BUO.TEAD4.MCF-7 180 bp overlap
WDHD1 2 datasets
ChIP MCF-7_Ab_R1251-1-1A5 GSE97661.WDHD1.MCF-7_Ab_R1251-1-1A5 150 bp overlap
ChIP MCF-7_Ab_R1251-1-1B10 GSE97661.WDHD1.MCF-7_Ab_R1251-1-1B10 136 bp overlap
XRN2 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.XRN2.DLD-1_NELFCD-AID 210 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.XRN2.DLD-1_NELFCD-AID_treated 211 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 95 bp overlap
ZBED1 1 dataset
ChIP K-562 ENCSR286PCG.ZBED1.K-562 125 bp overlap
ZMYM3 1 dataset
ChIP MCF-7 GSE97661.ZMYM3.MCF-7 322 bp overlap
ZNF217 3 datasets
ChIP MCF-7 ENCFF299BWK 339 bp overlap
ChIP MCF-7 ENCFF299BWK 336 bp overlap
ChIP MCF-7 ENCFF299BWK 122 bp overlap
ZXDC 1 dataset
ChIP MCF-7 GSE97661.ZXDC.MCF-7 239 bp overlap