chr1 : 235,920,637 235,921,023
386 bp 109 TFs 0 linked genes
This 386 bp open chromatin element has no linked target genes and is bound by 109 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:235,915,637 – 235,926,023
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 57 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 338 bp overlap
ARID1A 2 datasets
ChIP NGP GSE134626.ARID1A.NGP 185 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 254 bp overlap
ARID2 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 64 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 386 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 146 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 310 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 102 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 246 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 217 bp overlap
BRD4 5 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 269 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 135 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 148 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 149 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 85 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 386 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 188 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 189 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 311 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 342 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 107 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 343 bp overlap
EHF 1 dataset
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 117 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 212 bp overlap
ETV7 1 dataset
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 276 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 170 bp overlap
GATA2 8 datasets
ChIP SH-SY5Y ENCFF485YIB 235 bp overlap
ChIP SH-SY5Y ENCFF485YIB 80 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 320 bp overlap
ChIP SK-N-SH ENCFF764OZD 154 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 249 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 161 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 218 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 294 bp overlap
GATA3 10 datasets
ChIP BE2C GSE65664.GATA3.BE2C 225 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 205 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 217 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 164 bp overlap
ChIP SH-SY5Y ENCFF475HYF 176 bp overlap
ChIP SH-SY5Y ENCFF475HYF 64 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 272 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 218 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 223 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 264 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 53 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 81 bp overlap
ChIP DE DE-GATA4-1 348 bp overlap
ChIP DE DE-GATA4-2 352 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 188 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 386 bp overlap
ChIP DE DE-GATA6-2 386 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 349 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 316 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 386 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 253 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 386 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 386 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 298 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 357 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 296 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 351 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 264 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 162 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 259 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 189 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 135 bp overlap
KLF14 1 dataset
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCFF558HSJ 86 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 202 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KMT2C 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 158 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 70 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 122 bp overlap
MAZ 1 dataset
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
MED1 1 dataset
ChIP HCT-116 GSE121798.MED1.HCT-116 250 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 243 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 54 bp overlap
ChIP NB69 GSE138295.MYC.NB69 178 bp overlap
MYCN 8 datasets
ChIP BE2C GSE80151.MYCN.BE2C 174 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 213 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 129 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 237 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 386 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 246 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 174 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 108 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif DE_36h DE_36h-NR2F1_MA1537.2 13 bp overlap
NR3C1 2 datasets
ChIP NALM-6 GSE67046.NR3C1.NALM-6 270 bp overlap
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 177 bp overlap
Nr2f6 1 dataset
Motif DE_36h DE_36h-Nr2f6_MA0677.2 13 bp overlap
OVOL1 2 datasets
ChIP MCF-7 ENCFF537GWI 116 bp overlap
ChIP MCF-7 ENCSR829WBA.OVOL1.MCF-7 50 bp overlap
PATZ1 2 datasets
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 162 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 364 bp overlap
ChIP NALM-6 GSE115764.PAX5.NALM-6 166 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 302 bp overlap
PBX3 1 dataset
ChIP HEK293 ENCFF177BTM 104 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 79 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 386 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 231 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 143 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 386 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 58 bp overlap
PPARD 1 dataset
Motif DE_36h DE_36h-PPARD_MA1550.2 14 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 50 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 133 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 287 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 236 bp overlap
RXRB 1 dataset
Motif DE_36h DE_36h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_36h DE_36h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_36h DE_36h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 386 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 386 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 386 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 114 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 285 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 253 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 271 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 57 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 109 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 371 bp overlap
SP4 1 dataset
Motif DE_36h DE_36h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SP7 1 dataset
ChIP HEK293 ENCFF733RBE 108 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCFF827PZY 81 bp overlap
SPIB 1 dataset
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 58 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 164 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 246 bp overlap
Spi1 1 dataset
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 265 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 316 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 229 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 336 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 212 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 78 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 195 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 195 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 228 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 246 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1574.2 13 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 183 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF265CEM 198 bp overlap
ChIP HEK293 ENCFF582MWI 383 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 386 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 386 bp overlap
ZBTB12 1 dataset
Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 386 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 231 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 246 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 179 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 56 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 279 bp overlap
ZNF148 1 dataset
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 202 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 163 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCFF184XEW 84 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 156 bp overlap
ZNF675 1 dataset
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 346 bp overlap
ZNF865 1 dataset
ChIP HepG2 ENCFF472KAQ 107 bp overlap