chr1 : 25,517,919 – 25,518,289
370 bp 90 TFs 0 linked genes
This 370 bp open chromatin element has no linked target genes and is bound by 90 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:25,512,919 – 25,523,289
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
90 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 135 bp overlap
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 370 bp overlap
ATF3 4 datasets
ChIP K-562 ENCSR000BNU.ATF3.K-562 112 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 154 bp overlap
ChIP K562 ENCFF604FPV 308 bp overlap
ChIP K562 ENCFF965VXT 237 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 329 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 72 bp overlap
BRD4 2 datasets
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 110 bp overlap
ChIP hESC GSE33281.BRD4.hESC 145 bp overlap
CC2D1A 2 datasets
ChIP K-562 ENCSR343IFJ.CC2D1A.K-562 211 bp overlap
ChIP K562 ENCFF567XUT 263 bp overlap
CEBPB 1 dataset
ChIP K-562 ENCSR000EHE.CEBPB.K-562 115 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 166 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 54 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 313 bp overlap
CTCF 2 datasets
ChIP C4-2B ENCFF821XVN 101 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 130 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 218 bp overlap
DUX4 1 dataset
Motif DE_24h DE_24h-DUX4_MA0468.1 11 bp overlap
Dux 1 dataset
Motif DE_24h DE_24h-Dux_MA0611.3 11 bp overlap
E2F6 6 datasets
ChIP H1 ENCFF785DWK 370 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 304 bp overlap
ChIP K562 ENCFF136LTS 324 bp overlap
ChIP K562 ENCFF136LTS 90 bp overlap
ChIP K562 ENCFF163WMT 363 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 338 bp overlap
EGR1 5 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 272 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 198 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF895KGN 324 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 218 bp overlap
FOXA1 4 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 232 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 306 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 299 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 259 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 317 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 370 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 370 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 55 bp overlap
HOXB4 1 dataset
Motif DE_24h DE_24h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_24h DE_24h-HOXC4_MA1504.2 6 bp overlap
HOXD3 1 dataset
Motif DE_24h DE_24h-HOXD3_MA0912.2 8 bp overlap
HOXD4 1 dataset
Motif DE_24h DE_24h-HOXD4_MA1507.2 6 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 296 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF7 1 dataset
Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap
L3MBTL2 3 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 277 bp overlap
ChIP K562 ENCFF320EQC 370 bp overlap
ChIP K562 ENCFF320EQC 207 bp overlap
MAX 8 datasets
ChIP H1 ENCFF914VQY 202 bp overlap
ChIP K-562 ENCSR000EFV.MAX.K-562 305 bp overlap
ChIP K-562 ENCSR000FAE.MAX.K-562 131 bp overlap
ChIP K562 ENCFF110LJS 322 bp overlap
ChIP K562 ENCFF524IJO 217 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 356 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 313 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 226 bp overlap
MAZ 1 dataset
ChIP K-562 ENCSR000EFX.MAZ.K-562 148 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 194 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 370 bp overlap
MNT 7 datasets
ChIP K-562 ENCSR512NLO.MNT.K-562 233 bp overlap
ChIP K-562 ENCSR979QYJ.MNT.K-562 197 bp overlap
ChIP K-562 ENCSR390VGH.MNT.K-562 183 bp overlap
ChIP K562 ENCFF342DNS 327 bp overlap
ChIP K562 ENCFF450LDL 282 bp overlap
ChIP K562 ENCFF820IGH 364 bp overlap
ChIP K562 ENCFF820IGH 142 bp overlap
MYC 5 datasets
ChIP K-562 ENCSR000EGJ.MYC.K-562 235 bp overlap
ChIP K-562 ENCSR000EGS.MYC.K-562 194 bp overlap
ChIP K562 ENCFF988ZRU 329 bp overlap
ChIP NCI-H128 GSE41105.MYC.NCI-H128 102 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 340 bp overlap
MYCN 2 datasets
ChIP 22Rv1_castrated GSE117304.MYCN.22Rv1_castrated 200 bp overlap
ChIP 22Rv1_intact GSE117304.MYCN.22Rv1_intact 326 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 178 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 144 bp overlap
NFIC 2 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 266 bp overlap
ChIP K562 ENCFF167YID 277 bp overlap
NFYA 2 datasets
Motif DE_24h DE_24h-NFYA_MA0060.4 8 bp overlap
ChIP K562 ENCFF666BET 317 bp overlap
NFYB 4 datasets
ChIP K-562 ENCSR000EGQ.NFYB.K-562 252 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 211 bp overlap
ChIP K562 ENCFF709RXX 93 bp overlap
ChIP WTC11 ENCFF751ZTQ 304 bp overlap
NFYC 1 dataset
Motif DE_24h DE_24h-NFYC_MA1644.2 7 bp overlap
NR2C1 5 datasets
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
ChIP K-562 ENCSR742IDN.NR2C1.K-562 274 bp overlap
ChIP K-562 ENCSR178DEG.NR2C1.K-562 227 bp overlap
ChIP K562 ENCFF239KMA 272 bp overlap
ChIP K562 ENCFF568JLK 251 bp overlap
NR2C2 4 datasets
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
ChIP K-562 ENCSR750LYM.NR2C2.K-562 252 bp overlap
ChIP K562 ENCFF750AXF 370 bp overlap
ChIP K562 ENCFF902UIK 297 bp overlap
NR2F1 2 datasets
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 262 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
PBX1 1 dataset
Motif DE_24h DE_24h-PBX1_MA0070.2 9 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 348 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 70 bp overlap
ChIP BG03 GSE21614.POU5F1.BG03 158 bp overlap
POU6F1 1 dataset
Motif DE_24h DE_24h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_24h DE_24h-POU6F2_MA0793.2 9 bp overlap
PPARG 1 dataset
Motif DE_24h DE_24h-PPARG_MA0066.2 19 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 176 bp overlap
RAD51 2 datasets
ChIP K-562 ENCSR524BUE.RAD51.K-562 279 bp overlap
ChIP K562 ENCFF133ELP 349 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 260 bp overlap
RORA 1 dataset
Motif DE_24h DE_24h-RORA_MA0072.2 11 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 246 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 370 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 361 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP3 1 dataset
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP9 1 dataset
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
TBP 2 datasets
ChIP K-562 GSE55306.TBP.K-562 175 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 138 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 332 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 345 bp overlap
TFAP4 1 dataset
ChIP K562 ENCFF727PXG 370 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 157 bp overlap
USF1 7 datasets
ChIP H1 ENCFF090WVU 193 bp overlap
ChIP HepG2 ENCFF201JKA 337 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 255 bp overlap
ChIP K562 ENCFF202SFC 351 bp overlap
ChIP K562 ENCFF633EZB 119 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 244 bp overlap
ChIP WTC11 ENCFF699QGS 162 bp overlap
USF2 5 datasets
ChIP H1 ENCFF434EDF 271 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 221 bp overlap
ChIP K562 ENCFF397QGU 265 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 188 bp overlap
ChIP WTC11 ENCFF139JAW 368 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB33 6 datasets
ChIP HepG2 ENCFF778UKV 155 bp overlap
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 370 bp overlap
ChIP K562 ENCFF427SDV 214 bp overlap
ChIP K562 ENCFF875HLX 354 bp overlap
ChIP MCF-7 ENCFF622BUU 266 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 254 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 147 bp overlap
ZNF143 3 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 191 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 235 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
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