chr1 : 223,710,572 – 223,710,872
300 bp 83 TFs 1 linked gene
This 300 bp open chromatin element is linked to CAPN2 and is bound by 83 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CAPN2 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:223,705,572 – 223,715,872
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 185 bp overlap
ChIP K562 ENCFF938UXQ 270 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 300 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 300 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 212 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 194 bp overlap
ChIP K562 ENCFF963TXY 237 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 221 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 144 bp overlap
ChIP K562 ENCFF673OEZ 255 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 140 bp overlap
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 143 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 299 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 123 bp overlap
CREM 1 dataset
ChIP HepG2 ENCFF049UDY 300 bp overlap
CUX1 1 dataset
ChIP K562 ENCFF057AIX 300 bp overlap
DPF2 1 dataset
ChIP K562 ENCFF775HUO 244 bp overlap
EGR2 2 datasets
ChIP HEK293 ENCFF336LFH 300 bp overlap
ChIP HEK293 ENCFF336LFH 142 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 191 bp overlap
ChIP K562 ENCFF226VMS 221 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 266 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 224 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 209 bp overlap
ChIP HepG2 ENCFF361KNY 281 bp overlap
ChIP HepG2 ENCFF740VZW 174 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 300 bp overlap
FOXA2 7 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 248 bp overlap
ChIP DE DE-FOXA2-1 300 bp overlap
ChIP DE DE-FOXA2-2 300 bp overlap
ChIP HepG2 ENCFF533COJ 231 bp overlap
ChIP HepG2 ENCFF570ABM 153 bp overlap
ChIP HepG2 ENCFF894AYY 245 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 287 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 148 bp overlap
FOXM1 1 dataset
ChIP K562 ENCFF255RHV 258 bp overlap
FOXP1 1 dataset
ChIP HepG2 ENCFF823ERM 288 bp overlap
GATA1 4 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 128 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 177 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 182 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 171 bp overlap
GATA2 4 datasets
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF905PYM 300 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 133 bp overlap
ChIP K562 ENCFF544PCK 201 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 268 bp overlap
ChIP DE DE-GATA4-2 300 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 217 bp overlap
ChIP Hep-G2 ENCSR590CNM.GATA4.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF309FOQ 300 bp overlap
ChIP HepG2 ENCFF309FOQ 153 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 216 bp overlap
ChIP foregut GSE117136.GATA4.foregut 255 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 269 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 300 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 224 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 236 bp overlap
ChIP DE DE-GATA6-1 252 bp overlap
ChIP DE DE-GATA6-2 300 bp overlap
ChIP H9 ERP004206.GATA6.H9 245 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 166 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 236 bp overlap
ChIP foregut GSE117136.GATA6.foregut 259 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 211 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 270 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 270 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 300 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 300 bp overlap
HDAC2 4 datasets
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 246 bp overlap
ChIP HepG2 ENCFF087XCR 282 bp overlap
ChIP K-562 ENCSR893WSB.HDAC2.K-562 175 bp overlap
ChIP K562 ENCFF744ALD 175 bp overlap
HHEX 1 dataset
ChIP HepG2 ENCFF618PVM 297 bp overlap
HMBOX1 2 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 81 bp overlap
ChIP K562 ENCFF317JJX 266 bp overlap
HMG20A 1 dataset
ChIP HepG2 ENCFF599VWU 300 bp overlap
HMG20B 1 dataset
ChIP HepG2 ENCFF756WYV 297 bp overlap
HNRNPK 1 dataset
ChIP HepG2 ENCFF826MXP 300 bp overlap
ISL2 1 dataset
ChIP HepG2 ENCFF742RIP 300 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 147 bp overlap
KLF16 1 dataset
ChIP K562 ENCFF464PIV 274 bp overlap
LCOR 1 dataset
ChIP HepG2 ENCFF499KCU 163 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 133 bp overlap
MTA2 1 dataset
ChIP K562 ENCFF880VZB 272 bp overlap
NCOA2 1 dataset
ChIP HepG2 ENCFF853BJJ 300 bp overlap
NCOR1 3 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 207 bp overlap
ChIP K562 ENCFF788MPU 197 bp overlap
ChIP K562 ENCFF866HRM 181 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR000FCC.NFE2.K-562 102 bp overlap
ChIP K562 ENCFF163BSI 201 bp overlap
NFIC 3 datasets
ChIP Hep-G2 ENCSR000BQX.NFIC.Hep-G2 142 bp overlap
ChIP HepG2 ENCFF169TKU 300 bp overlap
ChIP K562 ENCFF167YID 177 bp overlap
NR2F2 1 dataset
ChIP HepG2 ENCFF483TVJ 300 bp overlap
NR2F6 2 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 156 bp overlap
ChIP HepG2 ENCFF429VKC 300 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 265 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 241 bp overlap
ChIP HepG2 ENCFF243FIR 237 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 300 bp overlap
ONECUT2 2 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 174 bp overlap
ChIP HepG2 ENCFF460COO 296 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 91 bp overlap
ChIP HepG2 ENCFF723PFC 202 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 134 bp overlap
PKNOX1 1 dataset
ChIP K562 ENCFF236IUS 96 bp overlap
PML 1 dataset
ChIP K562 ENCFF801LKH 300 bp overlap
POLR2A 1 dataset
ChIP K562 ENCFF514URW 294 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 300 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 81 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 94 bp overlap
PROX1 2 datasets
ChIP HepG2 ENCFF016ZJS 300 bp overlap
ChIP HepG2 ENCFF016ZJS 147 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 277 bp overlap
RERE 1 dataset
ChIP HepG2 ENCFF145QRA 207 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 109 bp overlap
ChIP K562 ENCFF506JCB 161 bp overlap
SMARCE1 1 dataset
ChIP K-562 ENCSR157TCS.SMARCE1.K-562 94 bp overlap
SOX13 3 datasets
ChIP Hep-G2 ENCSR445ACU.SOX13.Hep-G2 227 bp overlap
ChIP HepG2 ENCFF062VSQ 281 bp overlap
ChIP HepG2 ENCFF231PAK 175 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 276 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF767OCK 288 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 300 bp overlap
SP3 1 dataset
ChIP HEK293 ENCFF087XLA 257 bp overlap
SP5 2 datasets
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF931FHV 175 bp overlap
STAT5A 1 dataset
ChIP K562 ENCFF226BTJ 224 bp overlap
TAL1 10 datasets
ChIP K-562 GSE107726.TAL1.K-562 164 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 206 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 227 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 151 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 151 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 151 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 201 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 151 bp overlap
ChIP K562 ENCFF620GMX 238 bp overlap
ChIP K562 ENCFF661CCK 89 bp overlap
TBX2 1 dataset
ChIP HepG2 ENCFF811TLA 300 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 196 bp overlap
ChIP K562 ENCFF909RDY 300 bp overlap
ChIP K562 ENCFF931DJY 230 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 145 bp overlap
ChIP K562 ENCFF319QZT 143 bp overlap
TCF7 2 datasets
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 217 bp overlap
ChIP HepG2 ENCFF628OFQ 205 bp overlap
TCF7L2 5 datasets
ChIP HEK293 ENCFF513JQN 224 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 238 bp overlap
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 160 bp overlap
ChIP HepG2 ENCFF125ABE 300 bp overlap
ChIP HepG2 ENCFF510OLG 300 bp overlap
TEAD1 1 dataset
ChIP HepG2 ENCFF661PNM 174 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 300 bp overlap
TEAD4 3 datasets
ChIP Hep-G2 ENCSR000BRP.TEAD4.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF006QNB 300 bp overlap
ChIP K562 ENCFF673NIK 195 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 275 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 300 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 300 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 300 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCFF524ADK 300 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 177 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCFF066NGR 272 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 256 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 143 bp overlap
ZNF503 1 dataset
ChIP HepG2 ENCFF923HZL 300 bp overlap
ZNF580 1 dataset
ChIP HEK293 ENCFF906MQV 285 bp overlap
ZNF609 2 datasets
ChIP Hep-G2 ENCSR407BPU.ZNF609.Hep-G2 205 bp overlap
ChIP HepG2 ENCFF900FRP 300 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 218 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 109 bp overlap
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