chr13 : 99,204,975 99,205,472
497 bp 88 TFs 5 linked genes
This 497 bp open chromatin element is linked to 5 target genes and is bound by 88 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
RN7SKP9 234 bp At TSS Proximity
UBAC2 4.1 kb Proximal Proximity
UBAC2-AS1 4.3 kb Proximal Proximity
DOCK9 118.6 kb Distal Multiome
TM9SF2 296.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:99,199,975 – 99,210,472
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP GM12878 ENCFF521LQJ 120 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 118 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BCL6 4 datasets
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 112 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 224 bp overlap
ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 139 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 336 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 155 bp overlap
BHLHE40 2 datasets
ChIP GM12878 ENCFF010ZUU 58 bp overlap
ChIP GM12878 ENCFF521IZR 88 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 159 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCFF056JUS 341 bp overlap
CEBPB 2 datasets
ChIP GM12878 ENCFF942VJF 97 bp overlap
ChIP GM12878 ENCFF942VJF 327 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCFF870CVH 272 bp overlap
CREBBP 3 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 91 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 114 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 255 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 64 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 497 bp overlap
ChIP BLaER1 ENCFF364PUR 133 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 60 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 240 bp overlap
E2F6 2 datasets
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
E4F1 2 datasets
ChIP GM12878 ENCFF007QKJ 60 bp overlap
ChIP GM12878 ENCSR439WAF.E4F1.GM12878 99 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCFF432UGA 249 bp overlap
EP300 1 dataset
ChIP GM12878 ENCFF039QRE 54 bp overlap
ETS1 2 datasets
ChIP CD4-pos GSE146787.ETS1.CD4-pos 116 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 84 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 102 bp overlap
ChIP GM12878 ENCFF105ZMI 304 bp overlap
FOXA1 5 datasets
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 58 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 165 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 77 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 318 bp overlap
ChIP liver ERP002306.FOXA1.liver 120 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 404 bp overlap
ChIP DE DE-FOXA2-2 418 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 154 bp overlap
ChIP GM12878 ENCFF264DJE 482 bp overlap
FOXP1 1 dataset
ChIP B-cell_IgD-pos GSE114803.FOXP1.B-cell_IgD-pos 249 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 440 bp overlap
ChIP DE DE-GATA4-2 478 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 420 bp overlap
ChIP DE DE-GATA6-2 446 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 278 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 266 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 267 bp overlap
HDGF 1 dataset
ChIP GM12878 ENCFF653WYI 405 bp overlap
IKZF1 6 datasets
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap
ChIP GM12878 ENCFF616FJX 123 bp overlap
ChIP GM12878 ENCFF753XDO 104 bp overlap
ChIP GM12878 ENCFF824TGK 356 bp overlap
IRF4 3 datasets
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 176 bp overlap
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 108 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 464 bp overlap
JDP2 3 datasets
Motif DE_48h DE_48h-JDP2_MA0655.1 9 bp overlap
Motif DE_60h DE_60h-JDP2_MA0655.1 9 bp overlap
Motif DE_72h DE_72h-JDP2_MA0655.1 9 bp overlap
JUNB 1 dataset
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 206 bp overlap
JUND 3 datasets
Motif DE_48h DE_48h-JUND_MA0491.3 9 bp overlap
Motif DE_60h DE_60h-JUND_MA0491.3 9 bp overlap
Motif DE_72h DE_72h-JUND_MA0491.3 9 bp overlap
KLF1 1 dataset
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF3 2 datasets
Motif DE_72h DE_72h-KLF3_MA1516.2 10 bp overlap
ChIP keratinocyte GSE140991.KLF3.keratinocyte 301 bp overlap
KLF4 1 dataset
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF6 1 dataset
Motif DE_72h DE_72h-KLF6_MA1517.2 9 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 249 bp overlap
MAZ 2 datasets
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
Motif DE_72h DE_72h-MAZ_MA1522.2 8 bp overlap
MEF2B 2 datasets
ChIP tonsil GSE110682.MEF2B.tonsil 116 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 237 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 117 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 462 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 59 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCFF681QPL 209 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 64 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 263 bp overlap
NFATC3 2 datasets
ChIP GM12878 ENCFF340KVJ 66 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 233 bp overlap
NFE2 3 datasets
Motif DE_48h DE_48h-NFE2_MA0841.2 10 bp overlap
Motif DE_60h DE_60h-NFE2_MA0841.2 10 bp overlap
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 236 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 333 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 174 bp overlap
PAX5 11 datasets
Motif DE_60h DE_60h-PAX5_MA0014.4 8 bp overlap
Motif DE_72h DE_72h-PAX5_MA0014.4 8 bp overlap
ChIP GM12878 ENCFF482PUW 139 bp overlap
ChIP GM12878 ENCFF503GOV 109 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 230 bp overlap
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 199 bp overlap
ChIP GM12891 ENCFF490KVF 187 bp overlap
ChIP GM12891 ENCSR000BJH.PAX5.GM12891 192 bp overlap
ChIP GM12892 ENCFF635MSF 204 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 203 bp overlap
ChIP OCI-Ly7 GSE69558.PAX5.OCI-Ly7 257 bp overlap
PBX3 3 datasets
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 118 bp overlap
PKNOX1 4 datasets
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
Motif DE_72h DE_72h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 50 bp overlap
PRDM1 1 dataset
ChIP U266B1 GSE102360.PRDM1.U266B1 99 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 255 bp overlap
RBPJ 1 dataset
ChIP LCL GSE75503.RBPJ.LCL 185 bp overlap
RCOR1 1 dataset
ChIP GM12878 ENCFF982CRX 106 bp overlap
RELA 5 datasets
ChIP CD4_Th1_DMSO GSE62482.RELA.CD4_Th1_DMSO 179 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 243 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 146 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 204 bp overlap
ChIP GM18505 ENCSR000EAW.RELA.GM18505 182 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 72 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 376 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 429 bp overlap
RUNX1 1 dataset
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 54 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 76 bp overlap
RUNX3 2 datasets
ChIP GM12878 ENCFF395WHA 258 bp overlap
ChIP GM12878 ENCFF395WHA 97 bp overlap
SKIL 2 datasets
ChIP GM12878 ENCFF171OVM 150 bp overlap
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 54 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCFF130NRZ 67 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 443 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 395 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 426 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 290 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 380 bp overlap
SMARCA4 2 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 89 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 83 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 258 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 99 bp overlap
STAT3 1 dataset
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 101 bp overlap
STAT5B 1 dataset
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 53 bp overlap
TBL1XR1 2 datasets
ChIP GM12878 ENCFF409FTM 90 bp overlap
ChIP GM12878 ENCFF409FTM 355 bp overlap
TBX20 3 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 70 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 452 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 115 bp overlap
ChIP Ramos GSE139810.TCF3.Ramos 125 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCFF148RLQ 252 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 309 bp overlap
ZKSCAN5 3 datasets
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_72h DE_72h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 2 datasets
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_72h DE_72h-ZNF148_MA1653.2 10 bp overlap
ZNF24 3 datasets
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap
Motif DE_72h DE_72h-ZNF24_MA1124.1 13 bp overlap
ZNF257 3 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF320 1 dataset
Motif DE_72h DE_72h-ZNF320_MA1976.2 20 bp overlap
ZNF454 1 dataset
Motif DE_72h DE_72h-ZNF454_MA1712.2 17 bp overlap
ZNF692 1 dataset
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap