chr13 : 20,414,810 20,415,479
669 bp 89 TFs 2 linked genes
This 669 bp open chromatin element is linked to CRYL1 and IFT88 and is bound by 89 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CRYL1 110.7 kb Distal Multiome
IFT88 152.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:20,409,810 – 20,420,479
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 183 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 193 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 645 bp overlap
ChIP HepG2 ENCFF773YDL 217 bp overlap
AR 4 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 232 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 116 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 442 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 669 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 414 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 62 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 331 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 204 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 379 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 669 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 134 bp overlap
BRD4 8 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 369 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 91 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 669 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 634 bp overlap
ChIP hESC GSE33281.BRD4.hESC 80 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 496 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 669 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 406 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 561 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 145 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 88 bp overlap
CREBBP 1 dataset
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 243 bp overlap
CTCF 3 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 245 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 412 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 315 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 315 bp overlap
ChIP BLaER1 ENCFF364PUR 363 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 113 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 669 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 522 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 117 bp overlap
ERG 3 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 544 bp overlap
ChIP K-562 GSE23730.ERG.K-562 186 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 513 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 570 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 375 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 436 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 404 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 285 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 264 bp overlap
EZH2 8 datasets
ChIP GM23338 ENCFF613YON 276 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 296 bp overlap
ChIP ProEs GSE59087.EZH2.ProEs 125 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 669 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 414 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 669 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 669 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 517 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 340 bp overlap
FOXA1 1 dataset
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 123 bp overlap
GATA2 5 datasets
ChIP ME-1 GSE46044.GATA2.ME-1 238 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 233 bp overlap
ChIP SH-SY5Y ENCFF485YIB 204 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 156 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 136 bp overlap
GATA3 1 dataset
ChIP thymocyte GSE71751.GATA3.thymocyte 134 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 322 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 335 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 166 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 639 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 454 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 205 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 90 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 651 bp overlap
KLF4 3 datasets
ChIP MCF-7 ENCFF948KTQ 307 bp overlap
ChIP MCF-7 ENCFF948KTQ 650 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 158 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 373 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 61 bp overlap
ChIP WTC11 ENCFF223QFY 585 bp overlap
ChIP WTC11 ENCFF223QFY 362 bp overlap
MBD2 1 dataset
ChIP HMEC-1 GSE63233.MBD2.HMEC-1 243 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 281 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCFF394LGD 188 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 256 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 174 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 235 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 211 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 595 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 669 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 495 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 585 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 469 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 452 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 433 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 223 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 134 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 302 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 415 bp overlap
ChIP vagina ENCFF384GAB 393 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 195 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 138 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 284 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 267 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 595 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 669 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 117 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 537 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 440 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 489 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 231 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 133 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 253 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 669 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 629 bp overlap
RXR 2 datasets
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 325 bp overlap
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 82 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 669 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 412 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 69 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 669 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 461 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 547 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 415 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SPI1 2 datasets
ChIP ME-1 GSE46044.SPI1.ME-1 247 bp overlap
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 341 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 650 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 611 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 549 bp overlap
SUZ12 2 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 182 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 72 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 298 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 298 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 506 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 188 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 498 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 300 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 463 bp overlap
TP63 5 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 127 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 182 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 171 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 106 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 457 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 548 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 86 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 132 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 610 bp overlap
ZBTB33 3 datasets
ChIP HepG2 ENCFF778UKV 283 bp overlap
ChIP MCF-7 ENCSR231YFE.ZBTB33.MCF-7 217 bp overlap
ChIP WTC11 ENCFF048CFR 319 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 274 bp overlap
ZFX 1 dataset
ChIP PrEC GSE102616.ZFX.PrEC 305 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 242 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 414 bp overlap