chr12 : 113,468,422 113,468,712
290 bp 96 TFs 2 linked genes
This 290 bp open chromatin element is linked to LHX5 and LHX5-AS1 and is bound by 96 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LHX5 3.2 kb Proximal Proximity
LHX5-AS1 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:113,463,422 – 113,473,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 103 bp overlap
AR 2 datasets
ChIP myofibroblast GSE90772.AR.myofibroblast 70 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 183 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 290 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 118 bp overlap
BRD2 3 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 193 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 190 bp overlap
ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 52 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 143 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 290 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 226 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 290 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 83 bp overlap
CHD1 3 datasets
ChIP H1 ENCFF998XEK 207 bp overlap
ChIP K562 ENCFF118VJV 85 bp overlap
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 189 bp overlap
CREM 1 dataset
ChIP K-562 ENCSR077DKV.CREM.K-562 66 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 56 bp overlap
ChIP K562 ENCFF403WPG 239 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 202 bp overlap
CTCF 1 dataset
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 290 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 229 bp overlap
E2F6 3 datasets
ChIP H1 ENCFF785DWK 201 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 128 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 208 bp overlap
EGR1 3 datasets
ChIP A-375 GSE116190.EGR1.A-375 213 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 290 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 107 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 191 bp overlap
ESR1 6 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 184 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 144 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 123 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 113 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 81 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 290 bp overlap
EZH2 17 datasets
ChIP A673 ENCFF790MVL 205 bp overlap
ChIP A673 ENCFF955JRZ 183 bp overlap
ChIP GM23248 ENCFF404ZHM 142 bp overlap
ChIP GM23338 ENCFF613YON 290 bp overlap
ChIP GM23338 ENCFF886DXX 139 bp overlap
ChIP H1 ENCFF232NZA 290 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 290 bp overlap
ChIP astrocyte ENCFF365JTP 290 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 225 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 103 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 290 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 290 bp overlap
ChIP fibroblast of lung ENCFF479BAW 89 bp overlap
ChIP fibroblast of lung ENCFF479BAW 290 bp overlap
ChIP hepatocyte ENCFF552DZB 160 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 190 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 290 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 115 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 139 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 123 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 115 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 177 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 253 bp overlap
HDAC1 3 datasets
ChIP K-562 ENCSR387UWP.HDAC1.K-562 81 bp overlap
ChIP K-562 ENCSR000AQF.HDAC1.K-562 75 bp overlap
ChIP K562 ENCFF872AQB 160 bp overlap
HDAC2 1 dataset
ChIP A-549 ENCSR659LJJ.HDAC2.A-549 290 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 290 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 95 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 52 bp overlap
INO80 2 datasets
ChIP Hep-G2 GSE107730.INO80.Hep-G2 142 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 223 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 145 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 290 bp overlap
KDM5B 2 datasets
ChIP K-562 ENCSR000AQA.KDM5B.K-562 110 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 87 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 177 bp overlap
KLF14 1 dataset
ChIP HEK293 ENCSR780ESQ.KLF14.HEK293 158 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 112 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 164 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 156 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 109 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 155 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 64 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 163 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 157 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 197 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 193 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 71 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 64 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 86 bp overlap
PHF8 2 datasets
ChIP K-562 ENCSR000AQH.PHF8.K-562 108 bp overlap
ChIP K562 ENCFF217UCA 127 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 110 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 209 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 178 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 191 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 245 bp overlap
PRDM9 1 dataset
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
RBBP5 2 datasets
ChIP K-562 ENCSR000AQI.RBBP5.K-562 73 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 94 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 107 bp overlap
ChIP K562 ENCFF196WTG 220 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 160 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 132 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 290 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 135 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 122 bp overlap
RORC 1 dataset
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 231 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 246 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 109 bp overlap
SMAD2 1 dataset
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 126 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 290 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 290 bp overlap
SNAI2 1 dataset
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 116 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 290 bp overlap
SP2 3 datasets
ChIP HEK293 ENCFF181QXT 290 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 290 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 232 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 166 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 290 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 155 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 208 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 284 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 290 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 78 bp overlap
SUZ12 12 datasets
ChIP H1 ENCFF881NFR 290 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 65 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 90 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 75 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 79 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 80 bp overlap
ChIP K-562 ENCSR412CTM.SUZ12.K-562 117 bp overlap
ChIP K562 ENCFF397TBJ 57 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 201 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 144 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SUZ12.SYO-1_shRING1A-B 289 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 290 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 161 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 183 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 290 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 107 bp overlap
ChIP HEK293 ENCFF752TCU 290 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 137 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 78 bp overlap
ZFHX2 2 datasets
ChIP HEK293 ENCFF167TUA 113 bp overlap
ChIP HEK293 ENCFF167TUA 176 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 289 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 231 bp overlap
ZNF765 1 dataset
ChIP HEK293T GSE78099.ZNF765.HEK293T 221 bp overlap
ZNF777 2 datasets
ChIP HEK293 ENCFF569SYP 76 bp overlap
ChIP HEK293 ENCSR295BIP.ZNF777.HEK293 80 bp overlap
ZNF93 1 dataset
Motif DE_24h DE_24h-ZNF93_MA1721.2 14 bp overlap