chr12 : 93,682,920 – 93,683,254
334 bp 79 TFs 1 linked gene
This 334 bp open chromatin element is linked to CRADD and is bound by 79 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CRADD 5.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:93,677,920 – 93,688,254
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 261 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 227 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 239 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 120 bp overlap
BRD2 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD2.K-562_iBET-BD1-IFNG 201 bp overlap
BRD3 2 datasets
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 274 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD3.THP-1_iBET-BD2 298 bp overlap
BRD4 14 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 244 bp overlap
ChIP HAP1 GSE108387.BRD4.HAP1 74 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 245 bp overlap
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 246 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD4.K-562_DMSO-IFNG 246 bp overlap
ChIP K-562_iBET-BD1 GSE138084.BRD4.K-562_iBET-BD1 190 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 276 bp overlap
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 251 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 204 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 124 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 186 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 267 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 294 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 312 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 204 bp overlap
CDK8 8 datasets
ChIP leiomyoma_PT1063 GSE128230.CDK8.leiomyoma_PT1063 57 bp overlap
ChIP leiomyoma_PT848 GSE128230.CDK8.leiomyoma_PT848 81 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 185 bp overlap
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 85 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 87 bp overlap
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 277 bp overlap
ChIP myometrium_PT886 GSE128230.CDK8.myometrium_PT886 84 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 171 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 171 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 122 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 120 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 82 bp overlap
CTCF 10 datasets
ChIP BE2C ENCFF757SRF 214 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 218 bp overlap
ChIP SK-N-SH ENCFF731NJX 227 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 100 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 109 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 250 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 192 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 227 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 219 bp overlap
ChIP uterus ENCSR392SFJ.CTCF.uterus 111 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 120 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 305 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 244 bp overlap
ESR1 7 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 285 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 223 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 171 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 334 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 182 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 198 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 252 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 236 bp overlap
ESRRA 2 datasets
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 194 bp overlap
ChIP K562 ENCFF968PEP 307 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 334 bp overlap
EZH1 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 154 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 144 bp overlap
FOS 2 datasets
ChIP leiomyoma_PT1063 GSE128230.FOS.leiomyoma_PT1063 61 bp overlap
ChIP leiomyoma_PT886 GSE128230.FOS.leiomyoma_PT886 103 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 107 bp overlap
GATA2 6 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 280 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 253 bp overlap
ChIP SK-N-SH ENCFF764OZD 334 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 216 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 269 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 263 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-2 170 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 226 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 181 bp overlap
GATA6 2 datasets
ChIP AGS GSE51936.GATA6.AGS 114 bp overlap
ChIP DE DE-GATA6-2 138 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 164 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 187 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 181 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 334 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 296 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 259 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 194 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 256 bp overlap
ISL1 1 dataset
ChIP Huh-7 GSE77957.ISL1.Huh-7 216 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 301 bp overlap
ChIP leiomyoma_PT886 GSE128230.JUN.leiomyoma_PT886 61 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 175 bp overlap
KMT2A 3 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 165 bp overlap
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 301 bp overlap
ChIP MOLM-13_DMSO-D3-180110 GSE127507.KMT2A.MOLM-13_DMSO-D3-180110 219 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 176 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 175 bp overlap
MED1 2 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 254 bp overlap
ChIP MOLM-13 GSE154985.MED1.MOLM-13 270 bp overlap
MED12 11 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 89 bp overlap
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 61 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 236 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 237 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 72 bp overlap
ChIP myometrium_PT848 GSE128230.MED12.myometrium_PT848 270 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 180 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 60 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 184 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 67 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 178 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 212 bp overlap
MEN1 4 datasets
ChIP MOLM-13 GSE149183.MEN1.MOLM-13 334 bp overlap
ChIP MOLM-13_compound10 GSE149183.MEN1.MOLM-13_compound10 156 bp overlap
ChIP MOLM-13_compound10 GSE149183.MEN1.MOLM-13_compound10 139 bp overlap
ChIP MOLM-13_compound11 GSE149183.MEN1.MOLM-13_compound11 334 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 334 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 290 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 323 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 144 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 172 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 236 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 184 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 123 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 173 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 100 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 235 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 121 bp overlap
PGR 3 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 334 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 334 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 144 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 334 bp overlap
PKNOX1 2 datasets
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 334 bp overlap
ChIP K562 ENCFF236IUS 308 bp overlap
POLR2A 4 datasets
ChIP adrenal gland ENCFF843OBJ 192 bp overlap
ChIP prostate gland ENCFF881OMH 334 bp overlap
ChIP uterus ENCFF208ADI 332 bp overlap
ChIP vagina ENCFF384GAB 334 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 214 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCFF283AJL 104 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 229 bp overlap
ChIP K562 ENCFF634XYR 291 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 258 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 199 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 137 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 217 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 195 bp overlap
ChIP K562 ENCFF967GRF 334 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 179 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 252 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 334 bp overlap
SMARCA4 1 dataset
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 154 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 166 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 192 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 334 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 119 bp overlap
TET2 1 dataset
ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 188 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 334 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 324 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 103 bp overlap
ZBTB7A 1 dataset
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 96 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 179 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR117WTM.ZNF24.K-562 178 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 284 bp overlap
ChIP HEK293 ENCFF784SLD 215 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 330 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap
ZNF592 2 datasets
ChIP K-562 ENCSR249BHQ.ZNF592.K-562 314 bp overlap
ChIP K562 ENCFF547OSS 334 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 139 bp overlap
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