chr11 : 19,772,537 19,772,824
287 bp 86 TFs 1 linked gene
This 287 bp open chromatin element is linked to NAV2 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NAV2 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:19,767,537 – 19,777,824
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 287 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 146 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 204 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 167 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 230 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 268 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 86 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 164 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 181 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 207 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 271 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 287 bp overlap
ChIP H1 ENCFF955PMP 248 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 209 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 274 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 203 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
E2F6 3 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
ChIP H1 ENCFF785DWK 287 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 276 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
EGR1 5 datasets
Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap
ChIP GM12878 ENCFF092DJY 184 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 117 bp overlap
ChIP H1 ENCFF451BLH 225 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 200 bp overlap
EGR2 2 datasets
Motif DE_12h DE_12h-EGR2_MA0472.2 11 bp overlap
ChIP HEK293 ENCFF336LFH 211 bp overlap
EGR3 1 dataset
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 148 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 287 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 146 bp overlap
ChIP hESC GSE17917.EP300.hESC 287 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 287 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 204 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 287 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 287 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 287 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 287 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 248 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 213 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 200 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 143 bp overlap
HOXC11 1 dataset
Motif DE_12h DE_12h-HOXC11_MA0651.3 11 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 287 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 287 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 287 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 287 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 287 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 140 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 150 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 123 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 249 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 237 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 265 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 287 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 240 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 287 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 287 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 257 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 287 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 287 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 287 bp overlap
ChIP hESC GSE20650.NANOG.hESC 274 bp overlap
ChIP hESC GSE18292.NANOG.hESC 190 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 287 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 207 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 193 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 254 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 207 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
OSR2 1 dataset
Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 287 bp overlap
ChIP H1 ENCFF833NJP 287 bp overlap
POU5F1 9 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 282 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 287 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 239 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 219 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 287 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 221 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 287 bp overlap
PRDM9 3 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 238 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 287 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 215 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 240 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 287 bp overlap
SMAD2 2 datasets
ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 286 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 244 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 287 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 287 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 287 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 270 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 287 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 287 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 287 bp overlap
SMAD3 6 datasets
ChIP BG03 GSE21614.SMAD3.BG03 277 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 221 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 218 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 223 bp overlap
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 124 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 268 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 287 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 287 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 237 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 287 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 287 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 240 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 268 bp overlap
SP1 3 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP H1 ENCFF263FUH 280 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 220 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 2 datasets
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap
SREBF2 2 datasets
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 156 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 238 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 201 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 130 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 287 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 285 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 287 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 279 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 182 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 248 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 272 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 281 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 287 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 287 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 223 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 287 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap