chr1 : 185,735,192 – 185,736,029
837 bp 101 TFs 1 linked gene
This 837 bp open chromatin element is linked to HMCN1 and is bound by 101 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HMCN1 802 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:185,730,192 – 185,741,029
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 280 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 835 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
BMI1 2 datasets
ChIP K-562 ENCSR782WRO.BMI1.K-562 199 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 511 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 158 bp overlap
BRD4 5 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 327 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 253 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 200 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 207 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 205 bp overlap
CBX8 4 datasets
ChIP A549 ENCFF656LMW 152 bp overlap
ChIP K-562_HS GSE121182.CBX8.K-562_HS 246 bp overlap
ChIP K562 ENCFF485TBL 291 bp overlap
ChIP K562 ENCFF485TBL 511 bp overlap
CDK9 1 dataset
ChIP A-375_A771726 GSE68052.CDK9.A-375_A771726 74 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 290 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 218 bp overlap
CREBBP 1 dataset
ChIP PC-3 GSE147455.CREBBP.PC-3 159 bp overlap
CTCF 4 datasets
ChIP gastroesophageal sphincter ENCFF569YIT 313 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 183 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 306 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 221 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 273 bp overlap
EGR1 1 dataset
ChIP macrophage_D4 GSE136216.EGR1.macrophage_D4 184 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 183 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 91 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 143 bp overlap
ChIP K562 ENCFF494QJK 397 bp overlap
ChIP K562 ENCFF494QJK 343 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 383 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 222 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXA1 30 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 302 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 296 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 240 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 292 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 328 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 370 bp overlap
ChIP MCF-7 GSE60270.FOXA1.MCF-7 167 bp overlap
ChIP MCF-7 GSE140185.FOXA1.MCF-7 266 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 250 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 144 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 117 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 278 bp overlap
ChIP MCF-7_DOX-neg GSE124654.FOXA1.MCF-7_DOX-neg 591 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 384 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 259 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 215 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 252 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 175 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 228 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 481 bp overlap
ChIP MCF-7_vehicle_ab1 GSE112969.FOXA1.MCF-7_vehicle_ab1 301 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 423 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 454 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 561 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 198 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 228 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 206 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 167 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 191 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 179 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 51 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 51 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 293 bp overlap
ChIP DE DE-FOXA2-1 406 bp overlap
ChIP DE DE-FOXA2-2 344 bp overlap
Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap
FOXA3 1 dataset
Motif DE_12h DE_12h-FOXA3_MA1683.2 7 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXF1 1 dataset
ChIP GIST-T1 GSE106624.FOXF1.GIST-T1 130 bp overlap
FOXI1 1 dataset
Motif DE_12h DE_12h-FOXI1_MA0042.2 7 bp overlap
FOXL2 4 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 426 bp overlap
ChIP HGrC1_C134W-TGF_parental GSE138496.FOXL2.HGrC1_C134W-TGF_parental 224 bp overlap
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 236 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 352 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXP1 1 dataset
Motif DE_12h DE_12h-FOXP1_MA0481.4 7 bp overlap
FOXP4 1 dataset
Motif DE_12h DE_12h-FOXP4_MA2117.1 7 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 158 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 273 bp overlap
GRHL1 1 dataset
Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 352 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 326 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF2 2 datasets
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 241 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
IRF4 3 datasets
ChIP B-cell GSE142493.IRF4.B-cell 337 bp overlap
ChIP BC-3 GSE132777.IRF4.BC-3 474 bp overlap
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
KMT2A 5 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 415 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 359 bp overlap
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 482 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 232 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 515 bp overlap
MEN1 3 datasets
ChIP MCF-7 GSE85317.MEN1.MCF-7 60 bp overlap
ChIP MCF-7 GSE85317.MEN1.MCF-7 411 bp overlap
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 202 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 327 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 192 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 251 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 263 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 325 bp overlap
NCOA1 1 dataset
ChIP LS180 GSE39277.NCOA1.LS180 99 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 144 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 379 bp overlap
PHIP 2 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 185 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 271 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 262 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 240 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 219 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 577 bp overlap
RELA 10 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 194 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 50 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 184 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 180 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 204 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 202 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 59 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 257 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 68 bp overlap
RNF2 5 datasets
ChIP A549 ENCFF650XYA 51 bp overlap
ChIP A549 ENCFF650XYA 411 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 442 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 213 bp overlap
ChIP K562 ENCFF653BQJ 428 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 2 datasets
ChIP MCF-7 ENCFF437VFY 531 bp overlap
ChIP MCF-7 ENCSR468LUO.SIN3A.MCF-7 500 bp overlap
SIX1 2 datasets
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF587VYG 377 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 436 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 157 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 431 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 248 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 151 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 225 bp overlap
ChIP MCF-7 GSE140185.SMARCA4.MCF-7 307 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 444 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 167 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 423 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 208 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 174 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 231 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 692 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 204 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 204 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 259 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 207 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 615 bp overlap
STAT1::STAT2 1 dataset
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 155 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF265CEM 645 bp overlap
YAP1 1 dataset
ChIP OVCAR-5 GSE57236.YAP1.OVCAR-5 362 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 129 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 607 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 706 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 370 bp overlap
ChIP HEK293 ENCFF809BPK 465 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 396 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 291 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 291 bp overlap
ZFP36 1 dataset
ChIP A-549 ENCSR294JWV.ZFP36.A-549 205 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 179 bp overlap
ZKSCAN3 1 dataset
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF24 8 datasets
ChIP HEK293 ENCFF308WOW 431 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 479 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 260 bp overlap
ChIP K-562 ENCSR099NCH.ZNF24.K-562 470 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 175 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 77 bp overlap
ChIP MCF-7 ENCFF861XIL 345 bp overlap
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 536 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 312 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 343 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF549 4 datasets
ChIP HEK293 ENCFF528IUI 266 bp overlap
ChIP HEK293 ENCFF565EYY 85 bp overlap
ChIP HEK293 ENCSR185QFX.ZNF549.HEK293 295 bp overlap
ChIP HEK293 GSE76494.ZNF549.HEK293 211 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 501 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 774 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 453 bp overlap
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