chr9 : 87,041,859 87,042,268
409 bp 92 TFs 1 linked gene
This 409 bp open chromatin element is linked to LINC02893 and is bound by 92 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02893 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:87,036,859 – 87,047,268
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 409 bp overlap
ATF4 2 datasets
ChIP K-562 ENCSR145TSJ.ATF4.K-562 91 bp overlap
ChIP K562 ENCFF674KTF 201 bp overlap
BRD2 6 datasets
ChIP K-562 GSE140325.BRD2.K-562 66 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 159 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD2.SUM159PT_DMSO 120 bp overlap
ChIP SUM159PT_JQ1 GSE116879.BRD2.SUM159PT_JQ1 154 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 137 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 155 bp overlap
BRD4 22 datasets
ChIP HEK293T GSE51633.BRD4.HEK293T 58 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 64 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 174 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 154 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 133 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 177 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 172 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 151 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 57 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 91 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 85 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 126 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 156 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 158 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 151 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 185 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 160 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 118 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 90 bp overlap
ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 88 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 144 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 128 bp overlap
BRD9 1 dataset
ChIP K-562 ENCSR177XCS.BRD9.K-562 53 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 409 bp overlap
CHD1 1 dataset
ChIP H1 ENCFF998XEK 232 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 409 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 98 bp overlap
EHMT2 2 datasets
ChIP K-562 ENCSR175EOM.EHMT2.K-562 101 bp overlap
ChIP K562 ENCFF053BWO 208 bp overlap
ELF4 1 dataset
ChIP HEK293T ENCFF509MGU 206 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 409 bp overlap
FOXA1 1 dataset
ChIP MCF-7 ENCFF465LTH 107 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 200 bp overlap
ChIP DE DE-FOXA2-2 233 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 79 bp overlap
ChIP K562 ENCFF015GDS 277 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF705LHX 404 bp overlap
GTF2F1 1 dataset
ChIP K562 ENCFF485ALN 249 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 409 bp overlap
ChIP K562 ENCFF771OHZ 409 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 226 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 111 bp overlap
KLF1 1 dataset
ChIP HEK293 ENCFF159QSW 175 bp overlap
KLF7 1 dataset
ChIP HEK293 ENCFF599UKL 371 bp overlap
KLF9 1 dataset
ChIP HEK293 ENCFF588INF 337 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 118 bp overlap
KMT2B 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2B.HEK293T_C-term_C104 126 bp overlap
L3MBTL2 4 datasets
ChIP HEK293T ENCFF482NJV 253 bp overlap
ChIP HEK293T ENCFF482NJV 409 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 98 bp overlap
ChIP K562 ENCFF320EQC 409 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 129 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCFF994GSG 409 bp overlap
MED26 1 dataset
ChIP HCT-116 GSE121355.MED26.HCT-116 221 bp overlap
MGA 2 datasets
ChIP K562 ENCFF140CEX 391 bp overlap
ChIP K562 ENCFF140CEX 329 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCFF683ZWN 409 bp overlap
NFRKB 5 datasets
ChIP HEK293T ENCFF538OWZ 224 bp overlap
ChIP K-562 ENCSR657EOF.NFRKB.K-562 74 bp overlap
ChIP K-562 ENCSR996ESX.NFRKB.K-562 122 bp overlap
ChIP K562 ENCFF057YFW 241 bp overlap
ChIP K562 ENCFF221WAF 234 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 409 bp overlap
NRF1 3 datasets
ChIP K562 ENCFF689EWI 255 bp overlap
ChIP K562 ENCFF791UHF 409 bp overlap
ChIP K562 ENCFF791UHF 311 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 121 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCFF016MNJ 383 bp overlap
PHF8 3 datasets
ChIP A549 ENCFF815XUD 79 bp overlap
ChIP A549 ENCFF815XUD 409 bp overlap
ChIP K562 ENCFF217UCA 409 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 409 bp overlap
ChIP H1 ENCFF566JSR 373 bp overlap
ChIP K562 ENCFF215CWW 374 bp overlap
ChIP K562 ENCFF215CWW 170 bp overlap
ChIP K562 ENCFF836GHX 409 bp overlap
POLR2H 2 datasets
ChIP K562 ENCFF377NHG 305 bp overlap
ChIP K562 ENCFF377NHG 409 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 347 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 142 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 177 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 193 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 341 bp overlap
RAD21 1 dataset
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 135 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 185 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 185 bp overlap
ChIP K562 ENCFF967GRF 409 bp overlap
RNF2 1 dataset
ChIP K562 ENCFF653BQJ 306 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCFF513YVP 181 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 223 bp overlap
ChIP HEK293 ENCFF711QQB 409 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 143 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 58 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 53 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 58 bp overlap
ChIP K562 ENCFF316MCJ 391 bp overlap
SOX6 1 dataset
ChIP K562 ENCFF059YCJ 395 bp overlap
SP2 1 dataset
ChIP HEK293 ENCFF181QXT 396 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 198 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 79 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 119 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 112 bp overlap
TAF7 1 dataset
ChIP K562 ENCFF314WLE 261 bp overlap
TAF9B 2 datasets
ChIP K-562 ENCSR100UQX.TAF9B.K-562 54 bp overlap
ChIP K562 ENCFF121ZIF 309 bp overlap
VDR 2 datasets
ChIP LS180_125 GSE31939.VDR.LS180_125 136 bp overlap
ChIP kidney-cortex GSE129585.VDR.kidney-cortex 258 bp overlap
WT1 1 dataset
ChIP HEK293 ENCFF906HIR 392 bp overlap
YY1 17 datasets
ChIP A-549 ENCSR000BPM.YY1.A-549 140 bp overlap
ChIP H1 ENCFF524BTL 189 bp overlap
ChIP H1 ENCFF524BTL 329 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 114 bp overlap
ChIP HEK293 ENCFF734SBY 268 bp overlap
ChIP HEK293 ENCFF734SBY 330 bp overlap
ChIP HEK293 ENCSR859RAO.YY1.HEK293 79 bp overlap
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 208 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 195 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 122 bp overlap
ChIP K-562 ENCSR000EWF.YY1.K-562 125 bp overlap
ChIP K-562 ENCSR000BKU.YY1.K-562 123 bp overlap
ChIP K562 ENCFF660QRE 146 bp overlap
ChIP K562 ENCFF660QRE 311 bp overlap
ChIP K562 ENCFF768DPZ 171 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 103 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 134 bp overlap
ZBTB10 1 dataset
ChIP HEK293 ENCFF679BCK 365 bp overlap
ZBTB11 1 dataset
ChIP HEK293 ENCFF262GZJ 161 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 399 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 272 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 134 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 409 bp overlap
ChIP HEK293 ENCFF752TCU 409 bp overlap
ChIP HEK293 ENCSR229DYF.ZBTB26.HEK293 178 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 101 bp overlap
ChIP K562 ENCFF521DSV 56 bp overlap
ZBTB48 2 datasets
ChIP HEK293 ENCFF809BPK 409 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 150 bp overlap
ZBTB8A 1 dataset
ChIP HEK293 ENCFF303WRD 189 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 308 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 106 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 117 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 347 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCFF638TIB 356 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCFF641ICT 405 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 84 bp overlap
ZNF280D 1 dataset
ChIP HEK293 ENCFF420AXB 277 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 301 bp overlap
ZNF324 1 dataset
ChIP HEK293 ENCFF062DPE 398 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 409 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 187 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 409 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 217 bp overlap
ZNF362 1 dataset
ChIP HEK293 ENCFF436CGE 308 bp overlap
ZNF366 3 datasets
ChIP HEK293 ENCFF799ATK 323 bp overlap
ChIP HEK293 ENCFF799ATK 361 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 184 bp overlap
ZNF423 1 dataset
ChIP HEK293 ENCFF937QHI 347 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 238 bp overlap
ZNF549 1 dataset
ChIP HEK293 ENCFF528IUI 245 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 184 bp overlap
ZNF610 1 dataset
ChIP HEK293 ENCFF778UKJ 405 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 401 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 121 bp overlap
ZSCAN29 3 datasets
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 87 bp overlap
ChIP K562 ENCFF797SOU 370 bp overlap
ChIP K562 ENCFF842XOY 287 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 337 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 409 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 73 bp overlap