chr7 : 21,971,858 – 21,972,791
933 bp 84 TFs 1 linked gene
This 933 bp open chromatin element is linked to CDCA7L and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CDCA7L 26.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:21,966,858 – 21,977,791
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP HCT-116 GSE130989.ARNT.HCT-116 338 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 703 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 285 bp overlap
ATF3 2 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 134 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 167 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD2 1 dataset
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 254 bp overlap
BRD4 4 datasets
ChIP HCT-116 GSE57628.BRD4.HCT-116 175 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 527 bp overlap
ChIP hESC GSE33281.BRD4.hESC 107 bp overlap
ChIP hESC GSE33281.BRD4.hESC 83 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CBX3 1 dataset
ChIP HCT116 ENCFF947BOL 322 bp overlap
CDK8 1 dataset
ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 329 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 169 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 103 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 291 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 305 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 158 bp overlap
ELF1 1 dataset
ChIP HCT116 ENCFF354GUK 465 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 192 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 213 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 326 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 200 bp overlap
GATA1 1 dataset
ChIP erythroid_R3R4 GSE43625.GATA1.erythroid_R3R4 71 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 564 bp overlap
GLIS2 2 datasets
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 828 bp overlap
ChIP HCT-116_DMSO GSE125927.GLIS2.HCT-116_DMSO 679 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 197 bp overlap
JUN 2 datasets
ChIP 786-O GSE86092.JUN.786-O 247 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 443 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 247 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 190 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 138 bp overlap
KLF14 1 dataset
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 155 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 258 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 131 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 122 bp overlap
ChIP WTC11 ENCFF223QFY 509 bp overlap
MAZ 2 datasets
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
ChIP HeLa-S3 ENCSR000ECL.MAZ.HeLa-S3 118 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 260 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 293 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 316 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 381 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 933 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 933 bp overlap
MYCN 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 90 bp overlap
NELFE 7 datasets
ChIP HCT-116 GSE132705.NELFE.HCT-116 245 bp overlap
ChIP HCT-116 GSE132705.NELFE.HCT-116 594 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.NELFE.HCT-116_KAP1-KO 244 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.NELFE.HCT-116_KAP1-KO 459 bp overlap
ChIP HeLa GSE125534.NELFE.HeLa 183 bp overlap
ChIP HeLa GSE125534.NELFE.HeLa 578 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 159 bp overlap
NFE2 3 datasets
ChIP K562 ENCFF047YKA 338 bp overlap
ChIP ProEs GSE59087.NFE2.ProEs 99 bp overlap
ChIP erythroid_R3R4 GSE43625.NFE2.erythroid_R3R4 118 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 347 bp overlap
NFE2L2 1 dataset
ChIP A-549 GSE113497.NFE2L2.A-549 465 bp overlap
NFKB2 1 dataset
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
NIPBL 1 dataset
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 240 bp overlap
NKX2-5 1 dataset
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 117 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 535 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 68 bp overlap
POLR2A 9 datasets
ChIP H54 ENCFF398BXN 259 bp overlap
ChIP H54 ENCFF398BXN 281 bp overlap
ChIP H54 ENCFF398BXN 281 bp overlap
ChIP HCT116 ENCFF508RDJ 314 bp overlap
ChIP HCT116 ENCFF508RDJ 262 bp overlap
ChIP HCT116 ENCFF508RDJ 283 bp overlap
ChIP HCT116 ENCFF849NGT 218 bp overlap
ChIP HeLa-S3 ENCFF224LWS 576 bp overlap
ChIP HeLa-S3 ENCFF224LWS 645 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 166 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 361 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 376 bp overlap
RAD21 2 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 373 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 209 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 132 bp overlap
RUNX1 2 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 169 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 109 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 273 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 128 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 233 bp overlap
SIN3A 2 datasets
ChIP HCT-116 ENCSR000BSG.SIN3A.HCT-116 131 bp overlap
ChIP HCT116 ENCFF203YBB 415 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 215 bp overlap
SMARCC1 2 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 435 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 269 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 392 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 244 bp overlap
SP1 2 datasets
ChIP HCT116 ENCFF800LBN 437 bp overlap
ChIP HCT116 ENCFF800LBN 437 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 230 bp overlap
SUPT5H 10 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 282 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 194 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 192 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 190 bp overlap
ChIP HCT-116_Nut3_pThr806 GSE138548.SUPT5H.HCT-116_Nut3_pThr806 182 bp overlap
ChIP HCT-116_Nut3_pThr806 GSE138548.SUPT5H.HCT-116_Nut3_pThr806 352 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 933 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 183 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 130 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 151 bp overlap
TAF1 1 dataset
ChIP H1 ENCFF478SZO 397 bp overlap
TAF3 1 dataset
ChIP HCT-116 GSE43539.TAF3.HCT-116 933 bp overlap
TBP 1 dataset
ChIP H1 ENCFF859IIO 377 bp overlap
TBX5 1 dataset
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 2 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 377 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 199 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 160 bp overlap
YY1 6 datasets
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 146 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 191 bp overlap
ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 217 bp overlap
ChIP HCT116 ENCFF497ZQZ 271 bp overlap
ChIP HCT116 ENCFF497ZQZ 196 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 113 bp overlap
YY1AP1 1 dataset
ChIP PC-9_2DF_DMSO GSE131687.YY1AP1.PC-9_2DF_DMSO 197 bp overlap
YY2 1 dataset
ChIP HeLa GSE76856.YY2.HeLa 74 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 325 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 177 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 171 bp overlap
ZNF530 1 dataset
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF76 2 datasets
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Motif ES_0h ES_0h-ZNF76_MA1716.2 17 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
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