chr6 : 70,280,303 – 70,280,910
607 bp 121 TFs 1 linked gene
This 607 bp open chromatin element is linked to COL9A1 and is bound by 121 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
COL9A1 2.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:70,275,303 – 70,285,910
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
121 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 272 bp overlap
AR 30 datasets
ChIP LNCaP ERP003503.AR.LNCaP 179 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 190 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 267 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 222 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 180 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 262 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 109 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 163 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 245 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 285 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 176 bp overlap
ChIP VCaP GSE83650.AR.VCaP 244 bp overlap
ChIP VCaP GSE98809.AR.VCaP 244 bp overlap
ChIP VCaP GSE148358.AR.VCaP 173 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 186 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 266 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 269 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 456 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 354 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 528 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 328 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 228 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 131 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 128 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 208 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 272 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 243 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 260 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 139 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 144 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 129 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 494 bp overlap
ChIP H1 ENCFF399KAM 607 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 607 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 305 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 397 bp overlap
ATF2 1 dataset
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 193 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 249 bp overlap
BCOR 2 datasets
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 222 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 447 bp overlap
BRD2 1 dataset
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 201 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 201 bp overlap
BRD4 5 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 128 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 510 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 478 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 309 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 202 bp overlap
CREB1 4 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 172 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 146 bp overlap
CREM 1 dataset
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 254 bp overlap
CTCF 1 dataset
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 264 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 322 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
ELK1::HOXA1 1 dataset
Motif DE_12h DE_12h-ELK1HOXA1_MA1931.1 14 bp overlap
ERF 1 dataset
Motif DE_12h DE_12h-ERF_MA0760.2 9 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 7 datasets
ChIP VCaP GSE28950.ERG.VCaP 158 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 227 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 216 bp overlap
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 302 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 186 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 244 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 195 bp overlap
ESR1 11 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 275 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 322 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 542 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 199 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 310 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 445 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 441 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 376 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 517 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 475 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 316 bp overlap
ETS1 1 dataset
Motif DE_12h DE_12h-ETS1_MA0098.4 9 bp overlap
ETS2 1 dataset
Motif DE_12h DE_12h-ETS2_MA1484.2 9 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
EZH2 3 datasets
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 109 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 434 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 69 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap
FLI1::DRGX 1 dataset
Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS::JUN 1 dataset
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
FOSL2::JUN 1 dataset
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 219 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 136 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GABPA 5 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
ChIP Hep-G2 ENCSR269TNX.GABPA.Hep-G2 172 bp overlap
ChIP VCaP GSE49091.GABPA.VCaP 288 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 260 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 293 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 300 bp overlap
GATA6 1 dataset
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 164 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 172 bp overlap
HNF4G 1 dataset
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 205 bp overlap
HOXB2::ELK1 1 dataset
Motif DE_12h DE_12h-HOXB2ELK1_MA1957.1 14 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 203 bp overlap
JUN 2 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 297 bp overlap
JUN::JUNB 1 dataset
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 177 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 188 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 388 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 140 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 323 bp overlap
NFIA 4 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
ChIP Hep-G2 GSE97661.NFIA.Hep-G2 248 bp overlap
ChIP HepG2 ENCFF815HWK 241 bp overlap
ChIP K-562 GSE97661.NFIA.K-562 475 bp overlap
NFIB 4 datasets
ChIP MCF-7 ENCFF799WGQ 237 bp overlap
ChIP MCF-7 ENCFF925CGH 289 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 394 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 394 bp overlap
NFIC 4 datasets
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 331 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 601 bp overlap
ChIP K562 ENCFF167YID 474 bp overlap
NFIX 3 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
ChIP K-562 ENCSR574VJG.NFIX.K-562 294 bp overlap
ChIP K562 ENCFF382SJS 301 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 157 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_GSI GSE104261.NOTCH3.TALL-1_GSI 96 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
ONECUT1 3 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 406 bp overlap
ChIP HepG2 ENCFF243FIR 173 bp overlap
ChIP liver ERP002306.ONECUT1.liver 229 bp overlap
ONECUT2 2 datasets
ChIP Hep-G2 ENCSR661PKJ.ONECUT2.Hep-G2 171 bp overlap
ChIP HepG2 ENCFF460COO 317 bp overlap
PAX5 1 dataset
Motif DE_12h DE_12h-PAX5_MA0014.4 8 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 325 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
ChIP U-937_ATRA-treated_RAR GSE98006.RARA.U-937_ATRA-treated_RAR 169 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 607 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 336 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RNF2 3 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 394 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 421 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 251 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 195 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 173 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 253 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 502 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 184 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 416 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 173 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 230 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 172 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 341 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 546 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 97 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 193 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 54 bp overlap
ZBTB7A 2 datasets
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 84 bp overlap
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 138 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 157 bp overlap
ZNF175 1 dataset
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 404 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 231 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 215 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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