chr5 : 93,421,447 93,421,820
373 bp 94 TFs 1 linked gene
This 373 bp open chromatin element is linked to NR2F1-AS1 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NR2F1-AS1 602 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:93,416,447 – 93,426,820
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 235 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 266 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 373 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 259 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 263 bp overlap
BRD4 8 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 287 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 172 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 218 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 346 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 373 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 306 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 368 bp overlap
ChIP hESC GSE33281.BRD4.hESC 79 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 88 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 312 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 344 bp overlap
CREB1 3 datasets
ChIP GM23338 ENCFF432ZEW 282 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 330 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 244 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 373 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 373 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 316 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 217 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 251 bp overlap
ChIP neuron GSE115407.CTCF.neuron 219 bp overlap
E2F5 1 dataset
ChIP WTC11 ENCFF449LLF 373 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 262 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 159 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 205 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 326 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GFI1 2 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 363 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 212 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 187 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 205 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 142 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 363 bp overlap
Hic1 2 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 4 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 263 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 373 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 328 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 306 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 161 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 261 bp overlap
LMO2 1 dataset
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 208 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 330 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 248 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 181 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 373 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 321 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 147 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 225 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 254 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 356 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 372 bp overlap
PLAG1 2 datasets
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
Motif ES_0h ES_0h-PLAG1_MA0163.1 14 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 3 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 208 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 139 bp overlap
POU5F1 18 datasets
ChIP BG03 GSE21614.POU5F1.BG03 284 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 373 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 248 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 294 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 236 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 218 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 373 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 373 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 285 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 288 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 163 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 127 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PRRX2 1 dataset
ChIP WTC11 ENCFF107JGJ 276 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 373 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 223 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 373 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 349 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 244 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 197 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 224 bp overlap
SMARCA4 4 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 363 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 373 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 373 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 373 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 373 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 373 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 271 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 373 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 373 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX13 2 datasets
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
Motif ES_0h ES_0h-SOX13_MA1120.2 7 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 236 bp overlap
SOX2 13 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
Motif ES_0h ES_0h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 373 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 333 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 275 bp overlap
ChIP glioma_stem GSE67282.SOX2.glioma_stem 251 bp overlap
ChIP hESC GSE18292.SOX2.hESC 129 bp overlap
ChIP hESC GSE69479.SOX2.hESC 219 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 362 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 245 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 271 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 287 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 366 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 247 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 188 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap
Sox3 2 datasets
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Motif ES_0h ES_0h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 215 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 142 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 68 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 222 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 304 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 255 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 318 bp overlap
ChIP WA01 GSE39096.YY1.WA01 219 bp overlap
Yy1 2 datasets
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 215 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 167 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 373 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF343 2 datasets
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
Motif ES_0h ES_0h-ZNF343_MA1711.2 16 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 263 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
Motif ES_0h ES_0h-ZNF610_MA1713.2 10 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF770 5 datasets
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 242 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 230 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 211 bp overlap
ZSCAN31 2 datasets
Motif DE_12h DE_12h-ZSCAN31_MA1722.2 18 bp overlap
Motif ES_0h ES_0h-ZSCAN31_MA1722.2 18 bp overlap