chr4 : 41,873,456 – 41,873,754
298 bp 81 TFs 1 linked gene
This 298 bp open chromatin element is linked to LINC00682 and is bound by 81 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00682 7.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,868,456 – 41,878,754
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AGO1 2 datasets
ChIP Hep-G2 GSE120104.AGO1.Hep-G2 185 bp overlap
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 185 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 298 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 153 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 298 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 234 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 298 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 298 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 192 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 244 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 278 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 298 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 293 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 252 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 206 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 298 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 298 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 186 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 147 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 111 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 298 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 298 bp overlap
CTCF 9 datasets
ChIP BE2C ENCFF757SRF 237 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 135 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 225 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 269 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 135 bp overlap
ChIP endodermal cell ENCFF471YCZ 298 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 271 bp overlap
ChIP neural progenitor cell ENCFF420RBO 268 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 220 bp overlap
CTCFL 3 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 285 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 216 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 242 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 162 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 116 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 240 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 183 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 136 bp overlap
EP300 2 datasets
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 200 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 197 bp overlap
ESR1 1 dataset
ChIP Ishikawa GSE99905.ESR1.Ishikawa 210 bp overlap
EZH2 29 datasets
ChIP A673 ENCFF955JRZ 170 bp overlap
ChIP A673 ENCFF955JRZ 298 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 298 bp overlap
ChIP GM23338 ENCFF613YON 108 bp overlap
ChIP GM23338 ENCFF613YON 234 bp overlap
ChIP GM23338 ENCFF886DXX 200 bp overlap
ChIP H1 ENCFF232NZA 298 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 215 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 176 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 185 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 283 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 298 bp overlap
ChIP astrocyte ENCFF365JTP 298 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 298 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 298 bp overlap
ChIP fibroblast of lung ENCFF479BAW 153 bp overlap
ChIP fibroblast of lung ENCFF479BAW 298 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 298 bp overlap
ChIP hepatocyte ENCFF552DZB 117 bp overlap
ChIP hepatocyte ENCFF552DZB 298 bp overlap
ChIP keratinocyte ENCFF070STK 298 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 298 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 138 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 297 bp overlap
ChIP neural cell ENCFF610EPB 298 bp overlap
ChIP neural cell ENCFF610EPB 155 bp overlap
ChIP neural progenitor cell ENCFF018MKA 298 bp overlap
ChIP neural progenitor cell ENCFF018MKA 298 bp overlap
ChIP neural progenitor cell ENCFF472NFV 298 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 207 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 285 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 152 bp overlap
GATA2 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 298 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 213 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 292 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 298 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 69 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 225 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 298 bp overlap
Hand1 1 dataset
Motif ES_0h ES_0h-Hand1_MA2123.1 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 298 bp overlap
JARID2 4 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 298 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 298 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 298 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 298 bp overlap
JUN 2 datasets
ChIP HUES-8 GSE109524.JUN.HUES-8 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 183 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 194 bp overlap
KDM4A 4 datasets
ChIP H1 ENCFF078LED 207 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 298 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 155 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 250 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 298 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 244 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 105 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 203 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 58 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 298 bp overlap
MYC 1 dataset
ChIP BE2C_SHCTR GSE70098.MYC.BE2C_SHCTR 298 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 61 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 298 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 293 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 298 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 298 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 61 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 298 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 185 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 194 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 298 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 228 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 232 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 298 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 166 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 298 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 296 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 261 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 298 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 298 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 263 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCFF747MAS 182 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 298 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 298 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 298 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 271 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 95 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 155 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 196 bp overlap
ChIP H1 ENCFF239FFS 166 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 88 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 88 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 287 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 298 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 298 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 195 bp overlap
SMAD2 1 dataset
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 298 bp overlap
SMAD2_3 2 datasets
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 295 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 90 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 171 bp overlap
SP4 1 dataset
ChIP H1 ENCFF473YOB 233 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 298 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 199 bp overlap
SUZ12 12 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 298 bp overlap
ChIP GM12878 ENCFF498QAM 298 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 294 bp overlap
ChIP H1 ENCFF507HGF 145 bp overlap
ChIP H1 ENCFF881NFR 298 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 57 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 113 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 298 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 298 bp overlap
ChIP NT2/D1 ENCFF574SXS 298 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 107 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 298 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 166 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 156 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 155 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 285 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 298 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 65 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 65 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 184 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 243 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 298 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 258 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 298 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 283 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 298 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 92 bp overlap
Zfx 1 dataset
Motif ES_0h ES_0h-Zfx_MA0146.3 10 bp overlap
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